CuGenDBv2

Gene ID	Sgr025909
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	tig00153016:1624347..1637588
RNA-Seq Expression	Sgr025909
Synteny	Sgr025909
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

6.2e-76

97.89

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.2e-76

97.89

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

XP_008465711.1 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]

4.7e-76

98.59

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

XP_022939256.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucurbita moschata]

6.2e-76

97.89

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

XP_038907229.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Benincasa hispida]

4.7e-76

98.59

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

2.3e-76

98.59

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

2.3e-76

98.59

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEI+DKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

1.9e-75

97.18

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        V+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

3.0e-76

97.89

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEKHGG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

2.5e-75

97.18

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTAN+LKHLFPVPKPDTKR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ
        VVTFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLYQ

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

9.1e-46

57.86

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
        +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GT  EA PH+I++ F+++LG+R ++IL++LFPVPK D++RV
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV

Query:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY
        +TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY
Subjt:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-45

58.57

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
        +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RV
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV

Query:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY
        +TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY
Subjt:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-45

58.57

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
        +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RV
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV

Query:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY
        +TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY
Subjt:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-45

58.57

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
        +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RV
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV

Query:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY
        +TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY
Subjt:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

1.2e-45

58.57

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV
        +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NVV RH+I D   +GTM EA PH+I + F+++LG+R ++IL++LFPVPK D+ RV
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRV

Query:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY
        +TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY
Subjt:  VTFANQSDYISFRHHIYEKHGGPKSIELKEIGPRFELRLY

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

2.5e-67

81.12

Show/hide

Query:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR
        VISEIIET R+H+FTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRH+I DKK++G MPE YPH+I NNFTT++G+R  NILKH+FP PK D KR
Subjt:  VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKR

Query:  VVTFANQSDYISFRHHIYEK-HGGPKSIELKEIGPRFELRLYQ
        +VTF+NQSDYISFR+H+Y+K  GGPKSIELKEIGPRFELRLYQ
Subjt:  VVTFANQSDYISFRHHIYEK-HGGPKSIELKEIGPRFELRLYQ

AT4G01560.1 Ribosomal RNA processing Brix domain protein

5.3e-25

43.05

Show/hide

Query:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPD--TK
        + +I+E     +FT +I+VH +R  PD L+I  LP GPTA+F L N+V R +IK+    G      P ++LNNFTT+LG R     + LFP P P+   +
Subjt:  ISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPD--TK

Query:  RVVTFANQSDYISFRHHIY--------EKHGGPKSIE--LKEIGPRFELRL
        RVVTF NQ D+I FRHH Y           G  ++I+  L+E GPRF L+L
Subjt:  RVVTFANQSDYISFRHHIY--------EKHGGPKSIE--LKEIGPRFELRL

Sequences

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CDS sequence

Show/hide CDS sequence

GTGATCTCAGAGATTATAGAGACTTGTCGTGCTCACGAATTTACAGACGTTATTTTAGTTCATGAACATCGTGGTGTACCGGATGGTTTAATTATCAGTCATCTACCTTT
TGGTCCAACCGCATATTTTGGATTGTTGAATGTGGTTACTAGACATGAAATTAAGGACAAAAAGGCTATGGGAACGATGCCTGAGGCCTATCCGCACATAATTTTGAACA
ATTTTACCACAAAGTTGGGTGAAAGGACAGCCAACATCTTAAAGCATCTATTTCCTGTGCCGAAGCCAGATACCAAACGTGTGGTTACTTTTGCTAATCAGTCTGACTAT
ATTTCATTCAGGCATCATATTTATGAGAAGCATGGGGGTCCTAAATCAATTGAGCTGAAGGAGATCGGTCCTCGGTTTGAATTACGACTGTACCAGGAGATTGTCTCCGC
TGATGTACCGAGCCTCGTCGCTTGCCAAGAACAACACAGCATTGGCAACATCTTCAGCCTCCAGCTCCACCCCCTGCAGATTTGCATGCTTTCTAGCAAACTCACTAAAA
CTTGCAGCCACATCCTCCCTTCCCTTCTTTCCACCCAAGTTACGTACCGTCATCGGCGTCGAAATCGAGTAAGGGGAGACACAGTTTACACGAATCCCGTGTCGTCCCAG
CTCCGCCGCAACGTTCCTGTAACACTGGCAACAGATATGATCGATCCTTGCTTGCGCGGAATCATTACACCTGCAGCGTACTTCATTCCCATGAATACTCCCTTCACATT
CACATCGAACACCCTCTCGAACTCTGATACCTCGACCTTGCGGATGTCGAAGCAGGGTGTGCCTGAGATCCCTGCGTTGTTCACCATTATGTCAAGTGTGCCGAATTTAC
TTACGGTCGAGTCGACTGCATTGCGGATGTCGTCTTCCACGGTGACATCACAAGAAACAGAGAGAGAAATAGAAGGAAATGATATCACCTCTTGGGAGAGAGTGAAGAAG
ATTCAGCACAAGCTGCCGCCATTGCTGCTGATCTCTCTTCTGAATGTGCTTCTGCGTGCGCCAAATGCAGGACGCCAGACAAGAAATAAACGCGTGATTGGCACGGGTGA
ATCCTCCATCGACCAAGAGATTGTCTCCGCTGATGTACCGAGCGTCGTCACTGGCCAAGAACAGCACAGCATTGGCAACATCTTCAGGCCTGAGTTCCACTCCTTGCAGA
TTAGCATTCTTTCCAGTAAACTCACGAAAACCTGCAAACACATCCTCAGTTCTCTCCTCTTCAGGCAAGTGAGCTACAGCCAAGGCCGTCGGAACAGCGTAAGGAGAGAC
ACAATTTACACGAATCCCATGTAG

mRNA sequence

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Protein sequence

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VISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHEIKDKKAMGTMPEAYPHIILNNFTTKLGERTANILKHLFPVPKPDTKRVVTFANQSDY
ISFRHHIYEKHGGPKSIELKEIGPRFELRLYQEIVSADVPSLVACQEQHSIGNIFSLQLHPLQICMLSSKLTKTCSHILPSLLSTQVTYRHRRRNRVRGDTVYTNPVSSQ
LRRNVPVTLATDMIDPCLRGIITPAAYFIPMNTPFTFTSNTLSNSDTSTLRMSKQGVPEIPALFTIMSSVPNLLTVESTALRMSSSTVTSQETEREIEGNDITSWERVKK
IQHKLPPLLLISLLNVLLRAPNAGRQTRNKRVIGTGESSIDQEIVSADVPSVVTGQEQHSIGNIFRPEFHSLQISILSSKLTKTCKHILSSLLFRQVSYSQGRRNSVRRD
TIYTNPM

Sgr025909 (gene) of Monk fruit (Qingpiguo) v1 genome