CuGenDBv2

Gene ID	Sgr026783
Organism	Siraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description	sigma factor binding protein 1, chloroplastic-like
Genome location	tig00153033:3739097..3739585
RNA-Seq Expression	Sgr026783
Synteny	Sgr026783
Gene Ontology terms	GO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domains	IPR008889 - VQ IPR039335 - Sigma factor binding protein 1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7027424.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.5e-37

58.96

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Query:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD
        GGGG GN + +T +GGV RR+PTKKTK P  KKKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF ++D      PDL  + TA G     
Subjt:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD

Query:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP--------AALLYESYA
         +  +N+P +L VELPAED  +G         SFYD FDDL  PPP+IGNFSG  P        AA++YESYA
Subjt:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP--------AALLYESYA

XP_022931925.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]

1.2e-37

60.36

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Query:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD
        GGGG GN + +T +GGV RR+PTKKTK P  KKKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF ++D      PDL  + TA G     
Subjt:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD

Query:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP----AALLYESYA
         +  +N+P +L VELPAED  +G         SFYD FDDL  PPP+IGNFSG  P    AA++YESYA
Subjt:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP----AALLYESYA

XP_022966643.1 uncharacterized protein LOC111466266 [Cucurbita maxima]

9.2e-38

59.54

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG
        MDGGGG GN + +T +GGV RR+PTKKTK P  KKKPIKVVYISNPMK++TSAS FMALVQELTGQDADFPDPSKF ++D      P L  +  A G   
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG

Query:  GDDV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA
        G  +  +N+P +L VELPAED  +G         SFYD FDDL  PPP+IGNFSG  P      AA++YESYA
Subjt:  GDDV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA

XP_023518833.1 uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]

2.7e-37

58.62

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG
        MDGGGG GN + +T +GGV RR+PTKKT  P  KKKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF ++D      PDL  +  A     
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG

Query:  GDDV---SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA
         D +   +N+P +L VELPAED  LG         SFYD FDDL  PPP+IGNFS   P      AA++YESYA
Subjt:  GDDV---SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA

XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]

1.9e-35

60.23

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP-KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PATDSGGSPRPDLDKTVTAVGVGG
        M+ G   GN+  + ++  V+RR+PTKKTK P KKKPIKVVYISNPMK+QTSAS+FMALVQELTG+DADFPDPSKF P+   GG+   DL     +   GG
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP-KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PATDSGGSPRPDLDKTVTAVGVGG

Query:  GDD---VSNL------PSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP--AALLYESYAR
        GDD    SNL       SLAVELP +D  LG         SFYD FDDL FPPPVIGNFSGL P  AA++YESYAR
Subjt:  GDD---VSNL------PSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP--AALLYESYAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3J8 VQ domain-containing protein

7.4e-33

57.87

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNPK---KKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--ATDSGGSPRPDLDKTVTAVG
        MD G   G+D  +  +  V+RR+PTKKTK PK   KKPIKVVYISNPMK+QTSAS FMALVQELTGQDADFPDPSKFP  A   G +    L  T+++  
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNPK---KKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--ATDSGGSPRPDLDKTVTAVG

Query:  VGGGDD-------VSNLPSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP---AALLYESYAR
         GG DD        SN  SL  E+PAED  LG         SFYD FDDL FP PVIGNFSGL P   AA++YES AR
Subjt:  VGGGDD-------VSNLPSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP---AALLYESYAR

A0A5A7SJV9 Sigma factor binding protein 2

4.8e-32

57.54

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTK--NPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--ATDSGGSPRPDLDKTVTAVG
        MD G   GN+     +  V+RR+P KKTK  N K KKPIKVVYISNPMK+QTSASEFMALVQELTGQDADFPDPSKFP  A     +    L  TV+   
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTK--NPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFP--ATDSGGSPRPDLDKTVTAVG

Query:  VGGGDD--------VSNLPSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP---AALLYESYAR
         GGGDD         SN PSL  ++PAED  LG         SFYD FDDL FPPPV+GN SGL P   AA++YES AR
Subjt:  VGGGDD--------VSNLPSLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP---AALLYESYAR

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like

9.6e-33

56.47

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP-KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PATDSGGSPRPDLDKTVTAVGVGG
        MDG  G G  + + ++ GVHRR+PTKKTK P K KPIKVVYISNPMK+Q SAS FMALVQ+LTGQDADFPDPS F PA     +  PD+  T     +  
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP-KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKF-PATDSGGSPRPDLDKTVTAVGVGG

Query:  GDDVSNLPSLAVELPAEDLD-LGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFPA----ALLYESYAR
            +N PSL VE+P ED   LG         SFYD  DDL FPPPVIGN+  L PA    A+LYESYAR
Subjt:  GDDVSNLPSLAVELPAEDLD-LGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFPA----ALLYESYAR

A0A6J1F0S9 sigma factor binding protein 1, chloroplastic-like

5.8e-38

60.36

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Query:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD
        GGGG GN + +T +GGV RR+PTKKTK P  KKKPIKVVYISNPMK++TSAS+FMALVQELTGQDADFPDPSKF ++D      PDL  + TA G     
Subjt:  GGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGD

Query:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP----AALLYESYA
         +  +N+P +L VELPAED  +G         SFYD FDDL  PPP+IGNFSG  P    AA++YESYA
Subjt:  DV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP----AALLYESYA

A0A6J1HSP6 uncharacterized protein LOC111466266

4.5e-38

59.54

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Query:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG
        MDGGGG GN + +T +GGV RR+PTKKTK P  KKKPIKVVYISNPMK++TSAS FMALVQELTGQDADFPDPSKF ++D      P L  +  A G   
Subjt:  MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNP--KKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGG

Query:  GDDV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA
        G  +  +N+P +L VELPAED  +G         SFYD FDDL  PPP+IGNFSG  P      AA++YESYA
Subjt:  GDDV--SNLP-SLAVELPAEDLDLGYLQKLAADDSFYDAFDDL-FPPPVIGNFSGLFP------AALLYESYA

SwissProt top hits

e value

%identity

Alignment

O80669 Sigma factor binding protein 2, chloroplastic

3.3e-06

56.36

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Query:  KKTKNPKKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPATD
        K+      KPIKV YISNPM+++T  S+F  LVQELTGQD AD  P P+ F A D
Subjt:  KKTKNPKKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPATD

Q9LDH1 Sigma factor binding protein 1, chloroplastic

6.0e-08

37.23

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Query:  VHRRRPTKKTKNPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDA-DF-PDPSKFPATDSGGSPRPDLDKTVTAVGVGGGDDVSNL-PSLAVELPA
        V R+ P +K K     KPIKV YISNPM++QT AS+F  LVQELTGQDA D  P+P   P++D      P                  NL P +  + P 
Subjt:  VHRRRPTKKTKNPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDA-DF-PDPSKFPATDSGGSPRPDLDKTVTAVGVGGGDDVSNL-PSLAVELPA

Query:  EDLDLGYLQKLAADDSFYDAFDDLFPPPVIGNFSGLF
         + D    + L A+D F        P  +   FSG F
Subjt:  EDLDLGYLQKLAADDSFYDAFDDLFPPPVIGNFSGLF

Arabidopsis top hits

e value

%identity

Alignment

AT2G41180.1 VQ motif-containing protein

2.4e-07

56.36

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Query:  KKTKNPKKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPATD
        K+      KPIKV YISNPM+++T  S+F  LVQELTGQD AD  P P+ F A D
Subjt:  KKTKNPKKKPIKVVYISNPMKIQTSASEFMALVQELTGQD-ADF-PDPSKFPATD

AT3G56710.1 sigma factor binding protein 1

4.3e-09

37.23

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Query:  VHRRRPTKKTKNPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDA-DF-PDPSKFPATDSGGSPRPDLDKTVTAVGVGGGDDVSNL-PSLAVELPA
        V R+ P +K K     KPIKV YISNPM++QT AS+F  LVQELTGQDA D  P+P   P++D      P                  NL P +  + P 
Subjt:  VHRRRPTKKTKNPK-KKPIKVVYISNPMKIQTSASEFMALVQELTGQDA-DF-PDPSKFPATDSGGSPRPDLDKTVTAVGVGGGDDVSNL-PSLAVELPA

Query:  EDLDLGYLQKLAADDSFYDAFDDLFPPPVIGNFSGLF
         + D    + L A+D F        P  +   FSG F
Subjt:  EDLDLGYLQKLAADDSFYDAFDDLFPPPVIGNFSGLF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACGGCGGCGGCGGCAACGGCAACGACAGCGGCAACACAGTCATCGGCGGCGTCCACCGGCGAAGGCCAACGAAGAAGACGAAGAACCCCAAGAAGAAGCCGATCAA
AGTAGTGTACATATCAAACCCCATGAAGATTCAGACCAGTGCTTCTGAATTTATGGCCTTGGTGCAAGAACTCACGGGCCAAGACGCCGACTTTCCAGACCCCTCTAAGT
TTCCGGCCACCGACAGCGGTGGCAGCCCCCGCCCCGACCTTGACAAGACGGTCACTGCCGTTGGCGTCGGAGGCGGCGATGACGTTAGTAATCTCCCTTCACTTGCTGTG
GAGCTGCCGGCGGAGGATCTTGATTTAGGCTACCTCCAGAAACTTGCGGCTGATGACAGTTTTTATGATGCATTTGACGACCTCTTTCCTCCTCCGGTGATCGGAAACTT
TTCCGGCTTGTTTCCGGCGGCACTGCTCTACGAATCTTATGCAAGGTGA

mRNA sequence

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Protein sequence

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MDGGGGNGNDSGNTVIGGVHRRRPTKKTKNPKKKPIKVVYISNPMKIQTSASEFMALVQELTGQDADFPDPSKFPATDSGGSPRPDLDKTVTAVGVGGGDDVSNLPSLAV
ELPAEDLDLGYLQKLAADDSFYDAFDDLFPPPVIGNFSGLFPAALLYESYAR

Sgr026783 (gene) of Monk fruit (Qingpiguo) v1 genome