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Sgr027929 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr027929
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionTranscription initiation factor IIA subunit 2
Genome locationtig00153056:1548314..1550593
RNA-Seq ExpressionSgr027929
SyntenySgr027929
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005672 - transcription factor TFIIA complex (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsIPR003194 - Transcription initiation factor IIA, gamma subunit
IPR009083 - Transcription factor IIA, alpha-helical domain
IPR009088 - Transcription factor IIA, beta-barrel
IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591702.1 UDP-glycosyltransferase 91C1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-30100Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

KAG6608125.1 Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3098.59Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

KAG7031763.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-3097.18Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKV++KGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

XP_022936677.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata]1.0e-30100Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

XP_022941425.1 transcription initiation factor IIA subunit 2-like [Cucurbita moschata]2.2e-3098.59Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

TrEMBL top hitse value%identityAlignment
A0A6J1BWA2 Transcription initiation factor IIA subunit 21.8e-3098.59Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQE VGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

A0A6J1F935 Transcription initiation factor IIA subunit 24.9e-31100Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

A0A6J1FTM1 Transcription initiation factor IIA subunit 21.1e-3098.59Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

A0A6J1ILT9 Transcription initiation factor IIA subunit 24.9e-31100Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

A0A6J1J100 Transcription initiation factor IIA subunit 21.1e-3098.59Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        NGTLSPELAIQVLVQFDKSMTEALESQVKSKV+IKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

SwissProt top hitse value%identityAlignment
A2XZI2 Transcription initiation factor IIA subunit 29.8e-2981.08Show/hide
Query:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        + ++GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KI
Subjt:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

O74948 Transcription initiation factor IIA subunit 21.9e-1651.35Show/hide
Query:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        L + G +SP+LA++VL  FDKSMTEAL  +V+S+++ KGHL TYRFCD VWTFI+++ +F+ ++   T  +I+I
Subjt:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

P0CR85 Transcription initiation factor IIA subunit 24.7e-1547.25Show/hide
Query:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIKEIVVGKKWPSQVIVCK
        L   G + P+LA++VL QFDKS+TE L+  VK+K +IKGHL TYR CD+VWTF+++D  FK E      G     E+V G K   +++ CK
Subjt:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIKEIVVGKKWPSQVIVCK

Q0DLD3 Transcription initiation factor IIA subunit 29.8e-2981.08Show/hide
Query:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        + ++GTLSPELAIQVLVQFDKSMTEALE+QVKSKVSIKGHLHTYRFCDNVWTFIL +A+FKNE++ E VG++KI
Subjt:  LFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

Q39236 Transcription initiation factor IIA subunit 24.4e-2987.32Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        +GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

Arabidopsis top hitse value%identityAlignment
AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)3.1e-3087.32Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        +GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)3.1e-3087.32Show/hide
Query:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI
        +GTLSPELAIQVLVQFDKSMTEALESQVK+KVSIKGHLHTYRFCDNVWTFILQDA FK++D QE V R+KI
Subjt:  NGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGCGAGAGAGAGAGCGTCGCCGCCGACGAGAGCAATAGTGAGATTGCTGTGCTCTTCGCGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCA
GTTCGATAAGTCTATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTACCGGTTCTGCGACAACGTTTGGACCTTCATTT
TGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGCAGAATTAAAATAAAGGAAATAGTCGTGGGGAAGAAATGGCCATCACAAGTCATTGTTTGCAAG
TTGCAAGTTGCAAGTTGGAAAGAAGGATCCAAACGTGATTCTGTAAAGTCATCGACCTTGAACAGCAGAAAGTTACTTTCACGCACATTGACGTTACATTTGACTGTAAT
TGCCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGCGAGAGAGAGAGCGTCGCCGCCGACGAGAGCAATAGTGAGATTGCTGTGCTCTTCGCGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCA
GTTCGATAAGTCTATGACTGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTACCGGTTCTGCGACAACGTTTGGACCTTCATTT
TGCAGGATGCAACATTTAAGAACGAGGATTCCCAAGAGACTGTTGGCAGAATTAAAATAAAGGAAATAGTCGTGGGGAAGAAATGGCCATCACAAGTCATTGTTTGCAAG
TTGCAAGTTGCAAGTTGGAAAGAAGGATCCAAACGTGATTCTGTAAAGTCATCGACCTTGAACAGCAGAAAGTTACTTTCACGCACATTGACGTTACATTTGACTGTAAT
TGCCTTCTAA
Protein sequenceShow/hide protein sequence
MERERESVAADESNSEIAVLFANGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIKEIVVGKKWPSQVIVCK
LQVASWKEGSKRDSVKSSTLNSRKLLSRTLTLHLTVIAF