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Sgr027947 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr027947
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
Description50S ribosomal protein 6, chloroplastic
Genome locationtig00153056:1791614..1791937
RNA-Seq ExpressionSgr027947
SyntenySgr027947
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR020526 - Ribosomal protein L6, chloroplast


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011652886.1 50S ribosomal protein 6, chloroplastic [Cucumis sativus]3.8e-4085.05Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTF GC+IS PPL N SASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWTLVSS SGD N E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAP  SE
Subjt:  QAPPASE

XP_022136057.1 50S ribosomal protein 6, chloroplastic [Momordica charantia]2.2e-4083.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTFFGCRIS PPLP+LSASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLP DWTLVSS SGDAN EAA      A
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP SE
Subjt:  QAPPASE

XP_022936242.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]1.9e-3983.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSIST+FG RIS PPL N SASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWT VSS S D   E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP +E
Subjt:  QAPPASE

XP_022975752.1 50S ribosomal protein 6, chloroplastic [Cucurbita maxima]4.2e-3983.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTF G RIS PPL N SASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWT+VSS S D   E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP +E
Subjt:  QAPPASE

XP_023536142.1 50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]5.0e-4084.11Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTFFG RIS PPL N SASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWT+VSS S D   E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP +E
Subjt:  QAPPASE

TrEMBL top hitse value%identityAlignment
A0A0A0LHS7 Uncharacterized protein1.8e-4085.05Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTF GC+IS PPL N SASKAAPCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWTLVSS SGD N E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAP  SE
Subjt:  QAPPASE

A0A5A7TB88 50S ribosomal protein 62.7e-3983.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTF GC+IS PPL N SASKAAPCSGGNL IECSSRPNKKATAHHMKTRP+KSQPWDIRRKPTVYPPLPPLP DWTLVSS SGD N E  S   SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAP  SE
Subjt:  QAPPASE

A0A6J1C4H7 50S ribosomal protein 6, chloroplastic1.1e-4083.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTFFGCRIS PPLP+LSASK  PC GGNLVIECSSRP KKATAHHMKTRPRK+QPWDIRR+PTVYPPLPPLP DWTLVSS SGDAN EAA      A
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP SE
Subjt:  QAPPASE

A0A6J1F7W7 50S ribosomal protein 6, chloroplastic-like9.2e-4083.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSIST+FG RIS PPL N SASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWT VSS S D   E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP +E
Subjt:  QAPPASE

A0A6J1IDX3 50S ribosomal protein 6, chloroplastic2.0e-3983.18Show/hide
Query:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA
        MSISTF G RIS PPL N SASK APCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLP DWT+VSS S D   E AS I SSA
Subjt:  MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSA

Query:  QAPPASE
        QAPP +E
Subjt:  QAPPASE

SwissProt top hitse value%identityAlignment
P11892 50S ribosomal protein 6, chloroplastic6.2e-1749.54Show/hide
Query:  SISTFFGCRISAPP---LPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDS
        S+S+ FGC +S  P   L N +       + G L+IECSSRP KK+TAHHMKTRPRKS+  D  RKPTVY PLPPLP D+T+V  A        AS +D 
Subjt:  SISTFFGCRISAPP---LPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDS

Query:  SAQAPPASE
        +   P  S+
Subjt:  SAQAPPASE

P82411 50S ribosomal protein 6, chloroplastic3.2e-2147.41Show/hide
Query:  MSISTFFGCRISAPP-----------LPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDAN
        MS+S  FG R+   P              L  S    C GG + IECSSRP KK TAHHMKTRP+K+  WDI+R P VYPPLPPLP++WT+VSSA  +A+
Subjt:  MSISTFFGCRISAPP-----------LPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDAN

Query:  AEAASLIDSSAQAPPA
        + +++   S+  A  A
Subjt:  AEAASLIDSSAQAPPA

Q9FKP0 50S ribosomal protein 6, chloroplastic2.0e-2053.06Show/hide
Query:  MSISTFFGCRI----SAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAAS
        MS+S  FG  I    ++P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP++W+  + AS D  A  A+
Subjt:  MSISTFFGCRI----SAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAAS

Arabidopsis top hitse value%identityAlignment
AT5G17870.1 plastid-specific 50S ribosomal protein 61.5e-2153.06Show/hide
Query:  MSISTFFGCRI----SAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAAS
        MS+S  FG  I    ++P L      K     G  +VIECSSRP KK+TAHH KTRP+K+QPWDI+RKPTVY PLPPLP++W+  + AS D  A  A+
Subjt:  MSISTFFGCRI----SAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTCGGCTCCACCACTGCCGAATTTATCTGCAAGCAAAGCAGCTCCATGCTCCGGCGGCAATTTGGTGATTGAATGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAATCTCAGCCATGGGACATTCGGCGCAAGCCAACCGTCTATCCTCCTCTGCCACCTC
TCCCTTCGGACTGGACCTTGGTTTCTTCAGCATCCGGCGACGCCAATGCCGAGGCAGCCTCTTTGATTGATTCGTCCGCACAAGCACCGCCTGCTAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATTTCCACCTTTTTCGGCTGTAGGATTTCGGCTCCACCACTGCCGAATTTATCTGCAAGCAAAGCAGCTCCATGCTCCGGCGGCAATTTGGTGATTGAATGCTC
GTCGAGGCCGAACAAGAAGGCGACTGCACATCACATGAAAACGAGGCCGCGGAAATCTCAGCCATGGGACATTCGGCGCAAGCCAACCGTCTATCCTCCTCTGCCACCTC
TCCCTTCGGACTGGACCTTGGTTTCTTCAGCATCCGGCGACGCCAATGCCGAGGCAGCCTCTTTGATTGATTCGTCCGCACAAGCACCGCCTGCTAGCGAGTAA
Protein sequenceShow/hide protein sequence
MSISTFFGCRISAPPLPNLSASKAAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPSDWTLVSSASGDANAEAASLIDSSAQAPPASE