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Sgr030164 (gene) of Monk fruit (Qingpiguo) v1 genome

Gene IDSgr030164
OrganismSiraitia grosvenorii cv. Qingpiguo (Monk fruit (Qingpiguo) v1)
DescriptionSplicing factor 3A subunit 3
Genome locationtig00153554:3608693..3609609
RNA-Seq ExpressionSgr030164
SyntenySgr030164
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR021966 - Splicing factor SF3a60 binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK29174.1 splicing factor 3A subunit 3 isoform X1 [Cucumis melo var. makuwa]1.8e-4194.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+EIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

XP_008466807.1 PREDICTED: splicing factor 3A subunit 3 isoform X1 [Cucumis melo]1.8e-4194.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+EIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

XP_011651597.1 splicing factor SF3a60 homolog [Cucumis sativus]5.3e-4194.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVR+MIDTIMSTTEKLVEIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

XP_022140873.1 splicing factor SF3a60 homolog [Momordica charantia]6.2e-4296.88Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTRASHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

XP_038875231.1 splicing factor SF3a60 homolog [Benincasa hispida]5.3e-4194.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTRASHEEVE+LERL+VKELQNEP S KDRLLQSHRVRNMIDTIMSTT+KLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

TrEMBL top hitse value%identityAlignment
A0A0A0LDU3 Matrin-type domain-containing protein2.6e-4194.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVR+MIDTIMSTTEKLVEIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

A0A1S3CTD5 splicing factor 3A subunit 3 isoform X18.8e-4294.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+EIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

A0A5A7U5F1 Splicing factor 3A subunit 3 isoform X18.8e-4294.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+EIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

A0A5D3E065 Splicing factor 3A subunit 3 isoform X18.8e-4294.79Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTR+SHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKL+EIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

A0A6J1CJ06 splicing factor SF3a60 homolog3.0e-4296.88Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLEVTRASHEEVE+LERL+VKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKD+ARKDEIAALGGQTTSGTNVFSAFYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

SwissProt top hitse value%identityAlignment
O46106 Splicing factor 3A subunit 39.1e-1244.09Show/hide
Query:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        TLLE  R  HEE E+L +L+V E   +    K+R+   HR++ +++   ++T +L ++YEDKDN RK EIAAL     SG N F+ FY RLK+
Subjt:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

O59706 Pre-mRNA-splicing factor sap614.1e-0428.95Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAAL
        MS ++LE  R +HEE+E+L++ +V      P + ++RL   H+    ++    T++KL+  +E  D  +  E+A +
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAAL

Q12874 Splicing factor 3A subunit 31.7e-1038.71Show/hide
Query:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        T+LE  R  HEE E+L  ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+DKD  RK+E+ A+     SG N F+ FY+RLK+
Subjt:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

Q9D554 Splicing factor 3A subunit 31.7e-1038.71Show/hide
Query:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        T+LE  R  HEE E+L  ++ KE+  + ++ +D++   HR R M D  M  +  L ++Y+DKD  RK+E+ A+     SG N F+ FY+RLK+
Subjt:  TLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

Q9FG01 Splicing factor SF3a60 homolog6.5e-3477.08Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLE TR++HEEVE+LERLVV++LQ EP S KDRL+Q HRVR+MI++IM TTEKLVE YEDKD A  DEIAALGGQT +GTNVFS FYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE

Arabidopsis top hitse value%identityAlignment
AT5G06160.1 splicing factor-related4.6e-3577.08Show/hide
Query:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE
        MSSTLLE TR++HEEVE+LERLVV++LQ EP S KDRL+Q HRVR+MI++IM TTEKLVE YEDKD A  DEIAALGGQT +GTNVFS FYDRLKE
Subjt:  MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCGCACGAGGAGGTGGAGAAGCTCGAGCGGCTAGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCTGGCAAGGACCG
TTTGCTACAGAGTCACCGAGTCCGCAACATGATTGACACCATCATGTCCACCACCGAAAAACTCGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTG
CGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTCAGTGCATTTTATGATAGACTGAAAGAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCGCACGAGGAGGTGGAGAAGCTCGAGCGGCTAGTAGTGAAGGAGCTCCAAAATGAACCTGCTTCTGGCAAGGACCG
TTTGCTACAGAGTCACCGAGTCCGCAACATGATTGACACCATCATGTCCACCACCGAAAAACTCGTTGAGATTTATGAAGATAAGGATAATGCCAGGAAAGATGAGATTG
CGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTCAGTGCATTTTATGATAGACTGAAAGAG
Protein sequenceShow/hide protein sequence
MSSTLLEVTRASHEEVEKLERLVVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTEKLVEIYEDKDNARKDEIAALGGQTTSGTNVFSAFYDRLKE