CuGenDBv2

Gene ID	Spg000009
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD_REPEATS_REGION domain-containing protein
Genome location	scaffold1:237972..239867
RNA-Seq Expression	Spg000009
Synteny	Spg000009
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0052415.1 DDB1- and CUL4-associated factor 4-like isoform X1 [Cucumis melo var. makuwa]

5.2e-38

88.42

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

XP_004134515.2 uncharacterized protein LOC101220880 isoform X1 [Cucumis sativus]

1.5e-37

87.37

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSL+SLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

XP_008439422.1 PREDICTED: uncharacterized protein LOC103484236 isoform X1 [Cucumis melo]

5.2e-38

88.42

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

XP_008439424.1 PREDICTED: uncharacterized protein LOC103484236 isoform X2 [Cucumis melo]

5.2e-38

88.42

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

XP_031743496.1 uncharacterized protein LOC101220880 isoform X2 [Cucumis sativus]

1.5e-37

87.37

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSL+SLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMD9 WD_REPEATS_REGION domain-containing protein

7.3e-38

87.37

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSL+SLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

A0A1S3AYQ0 uncharacterized protein LOC103484236 isoform X1

2.5e-38

88.42

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

A0A1S3AZD8 uncharacterized protein LOC103484236 isoform X2

2.5e-38

88.42

Show/hide

Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

A0A5A7UFC1 DDB1-and CUL4-associated factor 4-like isoform X1

2.5e-38

88.42

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQEV KRL RHRIPYLP D RNSRTSSQQW+KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPAD-RNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

A0A6J1ILI1 uncharacterized protein LOC111478534

1.2e-37

85.11

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Query:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPADRNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM
        H ENVVLCGLRNG+I+TIDTRERQ V KRL RHRIPYLP DR+SRTSSQQW+KLTGNI+PSCTVKMPSSISSLVSLQFDDRYFL+SSM+GSV +
Subjt:  HLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPADRNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSMEGSVSM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G17370.1 Transducin/WD40 repeat-like superfamily protein

1.1e-14

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Query:  NVVLCGLRNGIILTIDTRERQ-EVFKRLSRHRIPYLPADRNSRTSS-QQWF-----------------KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFL
        N+V CGLRNG I+++D RER    F RL+RH+I Y  + +   TS+ +QWF                 +L GNI PS  + MPSS++ L +L+  D+Y +
Subjt:  NVVLCGLRNGIILTIDTRERQ-EVFKRLSRHRIPYLPADRNSRTSS-QQWF-----------------KLTGNIFPSCTVKMPSSISSLVSLQFDDRYFL

Query:  ASSMEGSVSM
        ASSM+G++ +
Subjt:  ASSMEGSVSM

Sequences

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CDS sequence

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ATGTCCTTCCAAACAAAAGTCAAGAAGATTACATTTTTCATTAATTTGACACCAGCTATTGTAGATCATCTTGAAAATGTTGTTCTGTGTGGACTTAGAAATGGCATAAT
TTTGACAATTGATACACGTGAAAGACAGGAAGTATTTAAAAGACTTTCAAGGCATCGAATTCCTTACTTGCCTGCAGATAGAAACTCCAGAACGTCTTCTCAGCAGTGGT
TTAAGCTCACTGGGAACATTTTTCCTTCTTGCACGGTTAAAATGCCTTCGTCCATATCAAGTTTGGTGTCACTTCAGTTTGATGACAGATACTTTTTGGCGAGCTCCATG
GAAGGATCGGTTAGTATGACTCTTCTTTAG

mRNA sequence

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Protein sequence

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MSFQTKVKKITFFINLTPAIVDHLENVVLCGLRNGIILTIDTRERQEVFKRLSRHRIPYLPADRNSRTSSQQWFKLTGNIFPSCTVKMPSSISSLVSLQFDDRYFLASSM
EGSVSMTLL

Spg000009 (gene) of Sponge gourd (cylindrica) v1 genome