; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000013 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000013
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1:368143..368829
RNA-Seq ExpressionSpg000013
SyntenySpg000013
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.0e-1431.05Show/hide
Query:  MVHCLSPFELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHL----------------EEFEGKVEK-KKNLAMLESHSSHQRWKPPDPNHWKLN
        +V+ LS  E+  + +I W IW  RN S+     +D Q   R I + +                ++ +G + + ++NL ML       RW  P  N WKLN
Subjt:  MVHCLSPFELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHL----------------EEFEGKVEK-KKNLAMLESHSSHQRWKPPDPNHWKLN

Query:  SDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLT
        +DASW E+ + GG+GW + D    ++ AG  KI +K  I  LE   ++ GL+ + + ++        P+ +E+D++EVI L+ +E  DLT
Subjt:  SDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.0e-1831.58Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS
        E   + +I W IW  RN S+      + +D    I  ++    G+          K  +L      ++  +WKPP  N WKLN++A+W  D + GG+GW 
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS

Query:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRA
        +RD    +I A CR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+ + +D TEI  +++EI  +     + S    SR 
Subjt:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRA

Query:  ENQETHDLA
         N+  H LA
Subjt:  ENQETHDLA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.2e-1232.32Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK----VEKKKNLAMLE--SHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIR
        E   + +I   IW  RN S+      + +D    I  ++    G+      K K+   +     ++  RWKPP  N WKLN+DA+W  D +  G+GW +R
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK----VEKKKNLAMLE--SHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIR

Query:  DSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        D    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  DSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.2e-2033.64Show/hide
Query:  MVHCLSPFELNYAALILWNIWNQRNYSL----HSNNQVDIQDSMRKISIHLEEFEGKVEKKKNLAMLESHSSHQ-RWKPPDPNHWKLNSDASWLEDEDAG
        M+   S  +L+   +  W IWN RNY +    HS+    IQ   + ++      E   + + +L+ML    +++ +W+PP  + W LN+DASW +    G
Subjt:  MVHCLSPFELNYAALILWNIWNQRNYSL----HSNNQVDIQDSMRKISIHLEEFEGKVEKKKNLAMLESHSSHQ-RWKPPDPNHWKLNSDASWLEDEDAG

Query:  GLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS
        G+GW IR  +  ++ AG R +     +K LEASA+LEGLR L       ++  + PL +ETD+ EV +LLN + EDLT+   +++EI  +     + +F+
Subjt:  GLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS

Query:  KCSRAENQETHDLA
        K  R  N   H LA
Subjt:  KCSRAENQETHDLA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.4e-2032.71Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS
        E   + +I W IW  RN S+      + +D    I  ++    G+          K  +L      ++  RWKPP  N WKLN+DA+W  D + GG+GW 
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS

Query:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS
        +RD    +I A CR I  +  I +LE  A+ EGLRA+    +     P+      P+ +E+D+LE I+LL+ + +D TEI  +++EI  +     + S  
Subjt:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS

Query:  KCSRAENQETHDLA
          SR  N+  HDLA
Subjt:  KCSRAENQETHDLA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.0e-1931.58Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS
        E   + +I W IW  RN S+      + +D    I  ++    G+          K  +L      ++  +WKPP  N WKLN++A+W  D + GG+GW 
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS

Query:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRA
        +RD    +I A CR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+ + +D TEI  +++EI  +     + S    SR 
Subjt:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRA

Query:  ENQETHDLA
         N+  H LA
Subjt:  ENQETHDLA

A0A6J1CQG0 uncharacterized protein LOC1110132169.8e-1531.05Show/hide
Query:  MVHCLSPFELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHL----------------EEFEGKVEK-KKNLAMLESHSSHQRWKPPDPNHWKLN
        +V+ LS  E+  + +I W IW  RN S+     +D Q   R I + +                ++ +G + + ++NL ML       RW  P  N WKLN
Subjt:  MVHCLSPFELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHL----------------EEFEGKVEK-KKNLAMLESHSSHQRWKPPDPNHWKLN

Query:  SDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLT
        +DASW E+ + GG+GW + D    ++ AG  KI +K  I  LE   ++ GL+ + + ++        P+ +E+D++EVI L+ +E  DLT
Subjt:  SDASWLEDEDAGGLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.6e-1232.32Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK----VEKKKNLAMLE--SHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIR
        E   + +I   IW  RN S+      + +D    I  ++    G+      K K+   +     ++  RWKPP  N WKLN+DA+W  D +  G+GW +R
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK----VEKKKNLAMLE--SHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIR

Query:  DSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN
        D    +I  GCR I  +  I +LE  A+ EGLRA+         +   P+ +E+D+LE I+LL+
Subjt:  DSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLN

A0A6J1DNV9 uncharacterized protein LOC1110224032.0e-2033.64Show/hide
Query:  MVHCLSPFELNYAALILWNIWNQRNYSL----HSNNQVDIQDSMRKISIHLEEFEGKVEKKKNLAMLESHSSHQ-RWKPPDPNHWKLNSDASWLEDEDAG
        M+   S  +L+   +  W IWN RNY +    HS+    IQ   + ++      E   + + +L+ML    +++ +W+PP  + W LN+DASW +    G
Subjt:  MVHCLSPFELNYAALILWNIWNQRNYSL----HSNNQVDIQDSMRKISIHLEEFEGKVEKKKNLAMLESHSSHQ-RWKPPDPNHWKLNSDASWLEDEDAG

Query:  GLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS
        G+GW IR  +  ++ AG R +     +K LEASA+LEGLR L       ++  + PL +ETD+ EV +LLN + EDLT+   +++EI  +     + +F+
Subjt:  GLGWSIRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS

Query:  KCSRAENQETHDLA
        K  R  N   H LA
Subjt:  KCSRAENQETHDLA

A0A6J1DSV1 uncharacterized protein LOC1110236087.0e-2132.71Show/hide
Query:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS
        E   + +I W IW  RN S+      + +D    I  ++    G+          K  +L      ++  RWKPP  N WKLN+DA+W  D + GG+GW 
Subjt:  ELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--------VEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWS

Query:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS
        +RD    +I A CR I  +  I +LE  A+ EGLRA+    +     P+      P+ +E+D+LE I+LL+ + +D TEI  +++EI  +     + S  
Subjt:  IRDSNRSLIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPV-----LPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFS

Query:  KCSRAENQETHDLA
          SR  N+  HDLA
Subjt:  KCSRAENQETHDLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0926.84Show/hide
Query:  NYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--VEKKKNLAMLESHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRS
        N    +LW +W  RN  +    + D  + +R+     EE+  +  +E K +   +E + S Q WK P P  W K N+DA+W  +    G+GW +R+ +  
Subjt:  NYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGK--VEKKKNLAMLESHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRS

Query:  LIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP
        ++  G R + +   +  LEA   LE LR  V+     +   +   + E+DA  ++NLLN +          ED+ ++    +E+K   +P
Subjt:  LIGAGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP

AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-1026.29Show/hide
Query:  ILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGKVEKKK-NLAMLESHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGC
        +LW +W  RN  +    + + Q+ +R+    LEE+  + E +        + SS  RW+PP P+ W K N+DA+W  D +  G+GW +R+          
Subjt:  ILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGKVEKKK-NLAMLESHSSHQRWKPPDPNHW-KLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGC

Query:  RKIAQKGPIKWLEASAM----------LEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP
            +KG +KW+ A A+          LE +R  V+       + V   + E+D+  +I +LN +          +DL  +     E+K V  P
Subjt:  RKIAQKGPIKWLEASAM----------LEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEG---------EDLTEISMMIDEIKGVASP

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0423.58Show/hide
Query:  ILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEF--EGKVEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGC
        ++W IW   N  + ++ +   Q ++       +E+       +++N       S + +W PP  +  K N DAS  E     GLGW +R+S  ++I  G 
Subjt:  ILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEF--EGKVEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIGAGC

Query:  RKIAQKGPIKWLEASAMLEGLRA
         K   +   +  E S ++  ++A
Subjt:  RKIAQKGPIKWLEASAMLEGLRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCACTGTCTTAGCCCCTTTGAGTTAAATTATGCGGCCCTAATCCTATGGAATATATGGAATCAACGAAATTACAGTCTCCATAGCAACAATCAGGTGGATATCCA
AGATTCAATGAGGAAAATCAGTATCCATCTGGAAGAATTTGAAGGAAAAGTAGAGAAGAAGAAAAACCTGGCGATGTTGGAGAGCCATTCGAGTCACCAAAGATGGAAAC
CTCCGGACCCCAACCACTGGAAGCTGAACTCAGACGCCTCATGGCTCGAGGACGAAGACGCTGGTGGGCTTGGGTGGTCCATCCGTGACTCCAACAGATCTCTAATTGGA
GCCGGTTGCAGGAAGATTGCCCAGAAGGGTCCGATCAAATGGCTCGAAGCTTCGGCGATGCTGGAAGGCTTGAGGGCTCTGGTTATAATGGCGAAAGATAGAGATATCGA
CCCAGTGCTACCGTTGGTAGTTGAAACGGATGCCTTGGAGGTGATAAACCTGTTGAACGAAGAAGGAGAAGATCTTACCGAGATTTCCATGATGATCGATGAAATCAAAG
GTGTGGCCTCTCCAGATTTCGTCTCCTCTTTCTCCAAATGCTCGCGAGCGGAGAATCAGGAAACCCATGACCTTGCATGCGCTGGCGCGCGTTTTGGCGAATTTTGTTAT
TCTTTTGGGCGCGACTTGTACCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCACTGTCTTAGCCCCTTTGAGTTAAATTATGCGGCCCTAATCCTATGGAATATATGGAATCAACGAAATTACAGTCTCCATAGCAACAATCAGGTGGATATCCA
AGATTCAATGAGGAAAATCAGTATCCATCTGGAAGAATTTGAAGGAAAAGTAGAGAAGAAGAAAAACCTGGCGATGTTGGAGAGCCATTCGAGTCACCAAAGATGGAAAC
CTCCGGACCCCAACCACTGGAAGCTGAACTCAGACGCCTCATGGCTCGAGGACGAAGACGCTGGTGGGCTTGGGTGGTCCATCCGTGACTCCAACAGATCTCTAATTGGA
GCCGGTTGCAGGAAGATTGCCCAGAAGGGTCCGATCAAATGGCTCGAAGCTTCGGCGATGCTGGAAGGCTTGAGGGCTCTGGTTATAATGGCGAAAGATAGAGATATCGA
CCCAGTGCTACCGTTGGTAGTTGAAACGGATGCCTTGGAGGTGATAAACCTGTTGAACGAAGAAGGAGAAGATCTTACCGAGATTTCCATGATGATCGATGAAATCAAAG
GTGTGGCCTCTCCAGATTTCGTCTCCTCTTTCTCCAAATGCTCGCGAGCGGAGAATCAGGAAACCCATGACCTTGCATGCGCTGGCGCGCGTTTTGGCGAATTTTGTTAT
TCTTTTGGGCGCGACTTGTACCCTTAG
Protein sequenceShow/hide protein sequence
MVHCLSPFELNYAALILWNIWNQRNYSLHSNNQVDIQDSMRKISIHLEEFEGKVEKKKNLAMLESHSSHQRWKPPDPNHWKLNSDASWLEDEDAGGLGWSIRDSNRSLIG
AGCRKIAQKGPIKWLEASAMLEGLRALVIMAKDRDIDPVLPLVVETDALEVINLLNEEGEDLTEISMMIDEIKGVASPDFVSSFSKCSRAENQETHDLACAGARFGEFCY
SFGRDLYP