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Spg000016 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000016
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptioncytochrome c6, chloroplastic
Genome locationscaffold1:397400..401666
RNA-Seq ExpressionSpg000016
SyntenySpg000016
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439440.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]4.6e-3595.89Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        GATLF+SDLERNGADAEEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]1.0e-3451.81Show/hide
Query:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS
        M  LSV SDFS SPHCFP+K                               Y L+  P                                   GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

XP_023003546.1 cytochrome c6, chloroplastic [Cucurbita maxima]7.8e-3552.41Show/hide
Query:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS
        M LLSVISDFS SPHCF +K                               Y L+  P                                   GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]1.0e-3451.81Show/hide
Query:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS
        M  LSV SDFS SPHCFP+K                               Y L+  P                                   GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

XP_038877732.1 cytochrome c6, chloroplastic [Benincasa hispida]5.4e-3652.41Show/hide
Query:  MHLLSVISDFSPSPHCFPVKH-------------------------YLLSTKP---------------------------------------QGATLFTS
        MHLLS  S+F P+PHCFP+K                            L+  P                                        GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVKH-------------------------YLLSTKP---------------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGADAEEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein3.2e-3494.52Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        GATLF+SDLERNGADAEEEIY ITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

A0A1S3AYD3 cytochrome c6, chloroplastic2.2e-3595.89Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        GATLF+SDLERNGADAEEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

A0A6J1CXZ2 cytochrome c6, chloroplastic1.9e-3493.15Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        GATLF+SDLERNGAD EEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVK+QADRGW NP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

A0A6J1EG38 cytochrome c6, chloroplastic5.0e-3551.81Show/hide
Query:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS
        M  LSV SDFS SPHCFP+K                               Y L+  P                                   GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

A0A6J1KPJ4 cytochrome c6, chloroplastic3.8e-3552.41Show/hide
Query:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS
        M LLSVISDFS SPHCF +K                               Y L+  P                                   GATLF+S
Subjt:  MHLLSVISDFSPSPHCFPVK------------------------------HYLLSTKP----------------------------------QGATLFTS

Query:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP
        DLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVK+QADRGWPNP
Subjt:  DLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP

SwissProt top hitse value%identityAlignment
Q93VA3 Cytochrome c6, chloroplastic2.5e-3181.69Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWP
        GATLFT DLERNG D EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWP

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c1.7e-3281.69Show/hide
Query:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWP
        GATLFT DLERNG D EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FVK QAD+GWP
Subjt:  GATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTTCTCTCCGTAATTTCAGATTTTAGCCCTAGTCCCCATTGCTTTCCAGTAAAGCATTATCTCCTGTCAACAAAACCTCAGGGTGCGACACTCTTTACAAGTGA
TCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCATATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGCAAGCCAAGGGGTCAGTGCA
CATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGGTGCAGGCAGATCGGGGGTGGCCAAACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCTTCTCTCCGTAATTTCAGATTTTAGCCCTAGTCCCCATTGCTTTCCAGTAAAGCATTATCTCCTGTCAACAAAACCTCAGGGTGCGACACTCTTTACAAGTGA
TCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCATATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGCAAGCCAAGGGGTCAGTGCA
CATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGCTTTTGGCGAAGTTTGTAAAGGTGCAGGCAGATCGGGGGTGGCCAAACCCATAG
Protein sequenceShow/hide protein sequence
MHLLSVISDFSPSPHCFPVKHYLLSTKPQGATLFTSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP