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Spg000037 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000037
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationscaffold1:232584..233396
RNA-Seq ExpressionSpg000037
SyntenySpg000037
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134515.2 uncharacterized protein LOC101220880 isoform X1 [Cucumis sativus]1.4e-4781.42Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG
        V+LYDHRLIQRGAVQTYDGH NSHTR+QLGVDPTETFV SGGEDC FRLWNIKSGKLIFEDKF DAVPSTICWRRAG            CEDHSSGAWLG
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG

Query:  SQRGLHYVSWPGT
        SQ G+HYVSWP T
Subjt:  SQRGLHYVSWPGT

XP_022978597.1 uncharacterized protein LOC111478534 [Cucurbita maxima]1.7e-4887.27Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG           C DHSSGAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS

Query:  QRGLHYVSWP
        Q GLHYVS+P
Subjt:  QRGLHYVSWP

XP_023544797.1 uncharacterized protein LOC111804281 [Cucurbita pepo subsp. pepo]1.7e-4887.27Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG           C DHSSGAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS

Query:  QRGLHYVSWP
        Q GLHYVS+P
Subjt:  QRGLHYVSWP

XP_031743496.1 uncharacterized protein LOC101220880 isoform X2 [Cucumis sativus]1.4e-4781.42Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG
        V+LYDHRLIQRGAVQTYDGH NSHTR+QLGVDPTETFV SGGEDC FRLWNIKSGKLIFEDKF DAVPSTICWRRAG            CEDHSSGAWLG
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG

Query:  SQRGLHYVSWPGT
        SQ G+HYVSWP T
Subjt:  SQRGLHYVSWPGT

XP_038877526.1 uncharacterized protein LOC120069787 [Benincasa hispida]1.9e-4784.82Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGED NFRLWNIKSGKLIFEDKFVDAVPSTICWRR             CEDHSSGAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS

Query:  QRGLHYVSWPGT
          GLHYVSWP T
Subjt:  QRGLHYVSWPGT

TrEMBL top hitse value%identityAlignment
A0A0A0KMD9 WD_REPEATS_REGION domain-containing protein6.9e-4881.42Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG
        V+LYDHRLIQRGAVQTYDGH NSHTR+QLGVDPTETFV SGGEDC FRLWNIKSGKLIFEDKF DAVPSTICWRRAG            CEDHSSGAWLG
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-----------SCEDHSSGAWLG

Query:  SQRGLHYVSWPGT
        SQ G+HYVSWP T
Subjt:  SQRGLHYVSWPGT

A0A5A7UFC1 DDB1-and CUL4-associated factor 4-like isoform X13.8e-4681.65Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-------SCEDHSSGAWLGSQRG
        V+LYDHRLIQRGAVQTYDGHANSHTR+QLGVDPTETFV SGGEDC FRLWNIKSGKLIFEDKF DAVPSTICWRRAG        CE + SGAWLGSQ G
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG-------SCEDHSSGAWLGSQRG

Query:  LHYVSWPGT
        +HYV+WP T
Subjt:  LHYVSWPGT

A0A6J1CYV5 uncharacterized protein LOC111015736 isoform X26.5e-4682.14Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRA----------GSCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDP+ETFV SGGEDC FRLWNIKSGKLIFEDKFVDAVPSTICWRRA             E+H SGAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRA----------GSCEDHSSGAWLGS

Query:  QRGLHYVSWPGT
        Q GLHYVSWP T
Subjt:  QRGLHYVSWPGT

A0A6J1EC37 uncharacterized protein LOC1114329754.5e-4785.45Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYD HANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG           C DHS GAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS

Query:  QRGLHYVSWP
        Q GLHYVS+P
Subjt:  QRGLHYVSWP

A0A6J1ILI1 uncharacterized protein LOC1114785348.2e-4987.27Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS
        VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG           C DHSSGAWLGS
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAG----------SCEDHSSGAWLGS

Query:  QRGLHYVSWP
        Q GLHYVS+P
Subjt:  QRGLHYVSWP

SwissProt top hitse value%identityAlignment
A6RUL1 Eukaryotic translation initiation factor 3 subunit I7.7e-0442.31Show/hide
Query:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV
        TY GH  +   +   VDPT T +ASG  D   RLW++K+GK +    F  AV
Subjt:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV

A7EF03 Eukaryotic translation initiation factor 3 subunit I7.7e-0442.31Show/hide
Query:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV
        TY GH  +   +   VDPT T +ASG  D   RLW++K+GK +    F  AV
Subjt:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV

F4HTH8 Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.25.9e-0434.92Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF
        ++++D R  ++G +QTY GH+   + I+    P   +V SGG D   ++W++ +GKL+ E KF
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF

Q2GTM8 Eukaryotic translation initiation factor 3 subunit I4.5e-0446.15Show/hide
Query:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV
        TY GH  +   I   VDPT T +ASG  D   RLW+IK+GK +    F  AV
Subjt:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV

Q7RXH4 Eukaryotic translation initiation factor 3 subunit I2.7e-0446.15Show/hide
Query:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV
        TY GH  +   I   VDPT T +ASG  D   RLW IK+G+L+    F  AV
Subjt:  TYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAV

Arabidopsis top hitse value%identityAlignment
AT1G11160.1 Transducin/WD40 repeat-like superfamily protein7.2e-0535.48Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDK
        +R++D R  ++G +QTY GH    + I+    P   +V SGG D   ++W++ +GKL+ E K
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDK

AT1G61210.1 Transducin/WD40 repeat-like superfamily protein4.2e-0534.92Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF
        ++++D R  ++G +QTY GH+   + I+    P   +V SGG D   ++W++ +GKL+ E KF
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF

AT1G61210.2 Transducin/WD40 repeat-like superfamily protein4.2e-0534.92Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF
        ++++D R  ++G +QTY GH+   + I+    P   +V SGG D   ++W++ +GKL+ E KF
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKF

AT5G17370.1 Transducin/WD40 repeat-like superfamily protein3.3e-2649.49Show/hide
Query:  VRLYDHRLIQRG-AVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICW----RRAGSCEDHSSGAWLGSQRGL
        ++LYD R+++RG  VQTY+GH NSHT I+ G+DP+E F+ SGG+DC  R+W+IKSG+L+ E+KF ++VPS +CW    R+    +    GAWLGS+  +
Subjt:  VRLYDHRLIQRG-AVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICW----RRAGSCEDHSSGAWLGSQRGL

AT5G23430.1 Transducin/WD40 repeat-like superfamily protein6.1e-0432.26Show/hide
Query:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDK
        ++++D R  ++G + TY GH      ++    P   +V SGGED   ++W++ +GKL+ E K
Subjt:  VRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTACAGGTAAGACTTTATGATCATCGCCTTATCCAGAGAGGCGCTGTACAAACCTATGATGGGCATGCAAATTCACATACTCGTATACAGCTTGGAGTTGATCC
CACTGAGACATTTGTCGCGTCTGGTGGAGAAGACTGCAACTTTCGTCTGTGGAATATCAAGTCTGGTAAATTGATCTTTGAGGATAAGTTTGTTGATGCTGTCCCCTCAA
CCATATGCTGGCGAAGGGCTGGAAGTTGTGAAGATCATAGTTCCGGAGCATGGCTTGGGTCACAAAGAGGACTTCATTATGTGAGCTGGCCAGGGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTACAGGTAAGACTTTATGATCATCGCCTTATCCAGAGAGGCGCTGTACAAACCTATGATGGGCATGCAAATTCACATACTCGTATACAGCTTGGAGTTGATCC
CACTGAGACATTTGTCGCGTCTGGTGGAGAAGACTGCAACTTTCGTCTGTGGAATATCAAGTCTGGTAAATTGATCTTTGAGGATAAGTTTGTTGATGCTGTCCCCTCAA
CCATATGCTGGCGAAGGGCTGGAAGTTGTGAAGATCATAGTTCCGGAGCATGGCTTGGGTCACAAAGAGGACTTCATTATGTGAGCTGGCCAGGGACATGA
Protein sequenceShow/hide protein sequence
MFLQVRLYDHRLIQRGAVQTYDGHANSHTRIQLGVDPTETFVASGGEDCNFRLWNIKSGKLIFEDKFVDAVPSTICWRRAGSCEDHSSGAWLGSQRGLHYVSWPGT