; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000048 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000048
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold6:24224289..24224711
RNA-Seq ExpressionSpg000048
SyntenySpg000048
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]1.5e-0736.84Show/hide
Query:  KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL
        +R+S  +W  P  G+WK N   +W  +Q++ GVGWILRD +G+ I MG K  ++  S    E++A++  I++++ L
Subjt:  KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL
KAA0043266.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa]7.3e-0741.18Show/hide
Query:  QEGNLSSAMKAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKR
        +E  L +++ +P+VR E   SH  W+ P  G WKLN  A W DS + GG+GW++ D+ GS I +G ++
Subjt:  QEGNLSSAMKAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKR
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]2.1e-0638.16Show/hide
Query:  KLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKL
        KLN  A+W +   +GGV W++ D+ GSSIC+  K + + W VK LE KA+ EG+     ++ +   S+ P I ++L
Subjt:  KLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKL
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.5e-0734.07Show/hide
Query:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI--LNLSHLKASHRSSN
        ++R  +  +  +W  P +  WKLN  A W    N GG+GWILRD  G  I    + I    ++ YLE+ AI EG+  +   H +  H  S+
Subjt:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI--LNLSHLKASHRSSN
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.0e-0837.5Show/hide
Query:  RWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKLDAAGV-VFSTRKRK
        +W  P    W LN  A+W DS +RGG+GWI+R   G  +  G + +    +VK LE  AI EG+ NL++L        L P+ ++ D+A V     RKR+
Subjt:  RWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKLDAAGV-VFSTRKRK

Query:  MLQK
         L K
Subjt:  MLQK
TrEMBL top hitse value%identityAlignment
A0A5D3E1D7 Transforming growth factor-beta receptor-associated protein 1 isoform X13.5e-0741.18Show/hide
Query:  QEGNLSSAMKAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKR
        +E  L +++ +P+VR E   SH  W+ P  G WKLN  A W DS + GG+GW++ D+ GS I +G ++
Subjt:  QEGNLSSAMKAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKR
A0A6D2KM87 RNase H domain-containing protein7.1e-0836.84Show/hide
Query:  KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL
        +R+S  +W  P  G+WK N   +W  +Q++ GVGWILRD +G+ I MG K  ++  S    E++A++  I++++ L
Subjt:  KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL
A0A6J1CP26 uncharacterized protein LOC1110134124.6e-0734.07Show/hide
Query:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI--LNLSHLKASHRSSN
        ++R  +  +  +W  P +  WKLN  A W    N GG+GWILRD  G  I    + I    ++ YLE+ AI EG+  +   H +  H  S+
Subjt:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI--LNLSHLKASHRSSN
A0A6J1DNV9 uncharacterized protein LOC1110224032.4e-0837.5Show/hide
Query:  RWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKLDAAGV-VFSTRKRK
        +W  P    W LN  A+W DS +RGG+GWI+R   G  +  G + +    +VK LE  AI EG+ NL++L        L P+ ++ D+A V     RKR+
Subjt:  RWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRSSNLPPIVVKLDAAGV-VFSTRKRK

Query:  MLQK
         L K
Subjt:  MLQK
A0A6J1DSV1 uncharacterized protein LOC1110236081.3e-0638.67Show/hide
Query:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI
        ++R     +  RW  P +  WKLN  A W    N GG+GWILRD  G  I    + I    ++ YLE+ AI EG+
Subjt:  IVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0629.27Show/hide
Query:  KSKEDFQEGNLSSAM--KAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSH
        ++ EDF+E +    +  KA   ++E+  S  +W  P     K N  ATW     R G+GWILR+ SG  + MG + + ++ +V   E++A++  +L +S 
Subjt:  KSKEDFQEGNLSSAM--KAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSH

Query:  LKASHRSSNLPPIVVKLDAAGVV
                N   I+ + DA  +V
Subjt:  LKASHRSSNLPPIVVKLDAAGVV
AT4G29090.1 Ribonuclease H-like superfamily protein1.6e-0728.85Show/hide
Query:  KSKEDFQEGNLSSAMKAPIVRME-KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL
        ++++D +E  + +  ++   + +  R S GRW  P     K N  ATW     R G+GW+LR+  G    MG + + K  SV   E++A++  +L+LS  
Subjt:  KSKEDFQEGNLSSAMKAPIVRME-KRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHL

Query:  KASH
        + ++
Subjt:  KASH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTAATTTAAAGTCCAAGGAAGATTTTCAGGAAGGCAACTTGTCTTCAGCGATGAAAGCTCCCATTGTTCGAATGGAGAAACGAGAGAGTCATGGTAGATGGAC
AACACCGGCAGCAGGAGAGTGGAAGCTGAATGTGGTTGCTACTTGGTGCGACTCTCAGAACAGAGGTGGCGTGGGATGGATTCTCCGTGACACTTCGGGTTCTTCAATTT
GCATGGGCTACAAGAGGATCAACAAAAGTTGGTCCGTTAAGTATCTTGAAATGAAAGCGATTCAGGAAGGGATTCTCAACTTATCTCACCTGAAAGCGTCTCATCGTAGC
TCAAATCTGCCTCCCATAGTAGTCAAGTTGGATGCAGCTGGAGTAGTGTTCTCAACAAGGAAGAGGAAGATGTTACAGAAATTTCTTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTAATTTAAAGTCCAAGGAAGATTTTCAGGAAGGCAACTTGTCTTCAGCGATGAAAGCTCCCATTGTTCGAATGGAGAAACGAGAGAGTCATGGTAGATGGAC
AACACCGGCAGCAGGAGAGTGGAAGCTGAATGTGGTTGCTACTTGGTGCGACTCTCAGAACAGAGGTGGCGTGGGATGGATTCTCCGTGACACTTCGGGTTCTTCAATTT
GCATGGGCTACAAGAGGATCAACAAAAGTTGGTCCGTTAAGTATCTTGAAATGAAAGCGATTCAGGAAGGGATTCTCAACTTATCTCACCTGAAAGCGTCTCATCGTAGC
TCAAATCTGCCTCCCATAGTAGTCAAGTTGGATGCAGCTGGAGTAGTGTTCTCAACAAGGAAGAGGAAGATGTTACAGAAATTTCTTTCCTAA
Protein sequenceShow/hide protein sequence
MKANLKSKEDFQEGNLSSAMKAPIVRMEKRESHGRWTTPAAGEWKLNVVATWCDSQNRGGVGWILRDTSGSSICMGYKRINKSWSVKYLEMKAIQEGILNLSHLKASHRS
SNLPPIVVKLDAAGVVFSTRKRKMLQKFLS