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Spg000051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:22065385..22065910
RNA-Seq ExpressionSpg000051
SyntenySpg000051
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016507519.1 PREDICTED: uncharacterized protein LOC107825207 [Nicotiana tabacum]6.5e-0429.41Show/hide
Query:  MWNIWNFRNRTHFPNK----------STATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNLGI---GEFRRSHVN
        +WNIW  RN   F NK          S ATE L+     S K      LK               W+ P   S+KLN+D A   NLGI   G   R+H  
Subjt:  MWNIWNFRNRTHFPNK----------STATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNLGI---GEFRRSHVN

Query:  GKVM--------------EAKAILEGIKAISQTCIQKKIPLEVETDPLAVVN-VLNGEELSDGAEAICWS
          ++              E KA++ G++   Q  +   +PLE+ TD    +N +LNG  + D     C S
Subjt:  GKVM--------------EAKAILEGIKAISQTCIQKKIPLEVETDPLAVVN-VLNGEELSDGAEAICWS

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]6.5e-0429.32Show/hide
Query:  MWNIWNFRNR-THFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNL---GIGEFRRSHVNGKVMEAKAI
        +W+IW +RN+  H   +   ++ +    E  I ++  + L        +N      W  P  + WKLN DA W D+L   G+G   R      +M     
Subjt:  MWNIWNFRNR-THFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNL---GIGEFRRSHVNGKVMEAKAI

Query:  LEGIKAISQT-CIQKKIPLEVETDPLAVVNVLN
         E +KA+SQ+  ++  I +E+E+D L VVN++N
Subjt:  LEGIKAISQT-CIQKKIPLEVETDPLAVVNVLN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.2e-0529.45Show/hide
Query:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQAL-WQKPKSNSWKLNSDAAWFDNL---GIG---------------EFR
        W IWN RN   F  + ++   +++ +   +   E+SY   T    L    +  L W+ P  + W LN+DA+W D+    GIG                F 
Subjt:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQAL-WQKPKSNSWKLNSDAAWFDNL---GIG---------------EFR

Query:  RSHVNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLN
         +  N K++EA AILEG++ ++   + +  PL +ETD   V ++LN
Subjt:  RSHVNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.5e-0430Show/hide
Query:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGP---------RRLRNHASQALWQKPKSNSWKLNSDAAW---FDNLGIG----------
        W IW  RN++ F    + T  +  VI+  I +         G          RR+ ++   A W+ P SNSWKLN+DAAW    +  GIG          
Subjt:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGP---------RRLRNHASQALWQKPKSNSWKLNSDAAW---FDNLGIG----------

Query:  -----EFRRSHVNGKVMEAKAILEGIKAISQT-C--IQKK--IPLEVETDPLAVVNVLNGEELSDGAEAI
                R+  N   +E  AI EG++AI Q  C  IQ++   P+ +E+D L  +++L+  +  D  E I
Subjt:  -----EFRRSHVNGKVMEAKAILEGIKAISQT-C--IQKK--IPLEVETDPLAVVNVLNGEELSDGAEAI

XP_026452057.1 uncharacterized protein LOC113352456 [Papaver somniferum]3.4e-0530.87Show/hide
Query:  MWNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPR-RLRNHASQALWQKPKSNSWKLNSDAAW--FDNL-----------GIGEFRRSH-
        MW+IW  R    F +     E ++  ++  I DW      ST  R  +R   SQ +W+KP     ++N DAAW  F+NL           G     + H 
Subjt:  MWNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPR-RLRNHASQALWQKPKSNSWKLNSDAAW--FDNL-----------GIGEFRRSH-

Query:  ---VNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLNGEE
           V+ +  EA A LE I    +  I   + L +E D   VVN +NGE+
Subjt:  ---VNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLNGEE

TrEMBL top hitse value%identityAlignment
A0A1S4D2M3 uncharacterized protein LOC1078252073.1e-0429.41Show/hide
Query:  MWNIWNFRNRTHFPNK----------STATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNLGI---GEFRRSHVN
        +WNIW  RN   F NK          S ATE L+     S K      LK               W+ P   S+KLN+D A   NLGI   G   R+H  
Subjt:  MWNIWNFRNRTHFPNK----------STATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNLGI---GEFRRSHVN

Query:  GKVM--------------EAKAILEGIKAISQTCIQKKIPLEVETDPLAVVN-VLNGEELSDGAEAICWS
          ++              E KA++ G++   Q  +   +PLE+ TD    +N +LNG  + D     C S
Subjt:  GKVM--------------EAKAILEGIKAISQTCIQKKIPLEVETDPLAVVN-VLNGEELSDGAEAICWS

A0A6J1D4B6 uncharacterized protein LOC1110171813.1e-0429.32Show/hide
Query:  MWNIWNFRNR-THFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNL---GIGEFRRSHVNGKVMEAKAI
        +W+IW +RN+  H   +   ++ +    E  I ++  + L        +N      W  P  + WKLN DA W D+L   G+G   R      +M     
Subjt:  MWNIWNFRNR-THFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNL---GIGEFRRSHVNGKVMEAKAI

Query:  LEGIKAISQT-CIQKKIPLEVETDPLAVVNVLN
         E +KA+SQ+  ++  I +E+E+D L VVN++N
Subjt:  LEGIKAISQT-CIQKKIPLEVETDPLAVVNVLN

A0A6J1DNV9 uncharacterized protein LOC1110224035.7e-0629.45Show/hide
Query:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQAL-WQKPKSNSWKLNSDAAWFDNL---GIG---------------EFR
        W IWN RN   F  + ++   +++ +   +   E+SY   T    L    +  L W+ P  + W LN+DA+W D+    GIG                F 
Subjt:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQAL-WQKPKSNSWKLNSDAAWFDNL---GIG---------------EFR

Query:  RSHVNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLN
         +  N K++EA AILEG++ ++   + +  PL +ETD   V ++LN
Subjt:  RSHVNGKVMEAKAILEGIKAISQTCIQKKIPLEVETDPLAVVNVLN

A0A6J1DSV1 uncharacterized protein LOC1110236083.1e-0430Show/hide
Query:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGP---------RRLRNHASQALWQKPKSNSWKLNSDAAW---FDNLGIG----------
        W IW  RN++ F    + T  +  VI+  I +         G          RR+ ++   A W+ P SNSWKLN+DAAW    +  GIG          
Subjt:  WNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGP---------RRLRNHASQALWQKPKSNSWKLNSDAAW---FDNLGIG----------

Query:  -----EFRRSHVNGKVMEAKAILEGIKAISQT-C--IQKK--IPLEVETDPLAVVNVLNGEELSDGAEAI
                R+  N   +E  AI EG++AI Q  C  IQ++   P+ +E+D L  +++L+  +  D  E I
Subjt:  -----EFRRSHVNGKVMEAKAILEGIKAISQT-C--IQKK--IPLEVETDPLAVVNVLNGEELSDGAEAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAACATCTGGAATTTCAGAAACAGAACACATTTCCCCAATAAATCCACAGCAACAGAGATACTACTAAAGGTTATCGAGGGAAGTATCAAAGACTGGGAAGCTTC
ATACCTTAAGAGCACTGGACCAAGAAGGTTGAGGAACCACGCGAGTCAAGCCCTGTGGCAAAAACCGAAGTCGAATTCGTGGAAGTTAAACTCAGATGCTGCTTGGTTCG
ATAACTTGGGCATTGGAGAATTCAGAAGATCACACGTAAATGGCAAGGTTATGGAGGCAAAAGCAATTCTAGAGGGAATCAAAGCAATTAGCCAAACTTGTATTCAAAAG
AAAATTCCCCTCGAAGTCGAAACAGACCCGCTGGCTGTCGTCAATGTCCTGAATGGAGAAGAATTATCTGACGGAGCTGAAGCTATTTGCTGGAGCCATCCTCCGCATCT
CAACAAGCTTGGAATCTATCTTTTTTTTGCACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAACATCTGGAATTTCAGAAACAGAACACATTTCCCCAATAAATCCACAGCAACAGAGATACTACTAAAGGTTATCGAGGGAAGTATCAAAGACTGGGAAGCTTC
ATACCTTAAGAGCACTGGACCAAGAAGGTTGAGGAACCACGCGAGTCAAGCCCTGTGGCAAAAACCGAAGTCGAATTCGTGGAAGTTAAACTCAGATGCTGCTTGGTTCG
ATAACTTGGGCATTGGAGAATTCAGAAGATCACACGTAAATGGCAAGGTTATGGAGGCAAAAGCAATTCTAGAGGGAATCAAAGCAATTAGCCAAACTTGTATTCAAAAG
AAAATTCCCCTCGAAGTCGAAACAGACCCGCTGGCTGTCGTCAATGTCCTGAATGGAGAAGAATTATCTGACGGAGCTGAAGCTATTTGCTGGAGCCATCCTCCGCATCT
CAACAAGCTTGGAATCTATCTTTTTTTTGCACTGTAA
Protein sequenceShow/hide protein sequence
MWNIWNFRNRTHFPNKSTATEILLKVIEGSIKDWEASYLKSTGPRRLRNHASQALWQKPKSNSWKLNSDAAWFDNLGIGEFRRSHVNGKVMEAKAILEGIKAISQTCIQK
KIPLEVETDPLAVVNVLNGEELSDGAEAICWSHPPHLNKLGIYLFFAL