; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000060 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000060
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationscaffold6:20919784..20922260
RNA-Seq ExpressionSpg000060
SyntenySpg000060
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]7.7e-8089.29Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS++CT+SINLTPR FNSRPP KLGS FLG QS LRW+SPV+IGPSNGSRATCWFN R NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA NEEIKDFILNFS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]5.0e-7990.48Show/hide
Query:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MASV+CT TSINL+P   NSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.0e-7991.07Show/hide
Query:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MASV+CT TSINL+P  FNSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK

XP_023520446.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]6.5e-7989.88Show/hide
Query:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MASV+CT TSINL+P  FNSRPP KLGSQFLG QS  RWVSP+AIGPSNGSRATCWFN R NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]2.7e-8090.48Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS++CT S+NLTPR FNSRPP KL SQFLG QS LRWVSPVAIGPSNGSRATCWFN R NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPNEEIKDFILN SV+ A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein3.7e-8089.29Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS++CT+SINLTPR FNSRPP KLGS FLG QS LRW+SPV+IGPSNGSRATCWFN R NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA NEEIKDFILNFS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT7.1e-7988.69Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS++CTTSINLTPR FNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN R NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA NEEIKDFIL FS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT7.1e-7988.69Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MAS++CTTSINLTPR FNSRPP KL S FLG QS LRW+SP++IGPSNGSRATCWFN R NAE AGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA NEEIKDFIL FS +KA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT2.4e-7990.48Show/hide
Query:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MASV+CT TSINL+P   NSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT4.9e-8091.07Show/hide
Query:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MASV+CT TSINL+P  FNSRPP KLGSQFLG QS LRWVSP+AIGPSNGSRATCWFN R NAE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVTCT-TSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT3.1e-4760Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATCWFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++      ++   ++   +     ++L W+ P    A+ P++ S     TC+F F   +AE AGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATCWFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT3.1e-4760Show/hide
Query:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATCWFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++      ++   ++   +     ++L W+ P    A+ P++ S     TC+F F   +AE AGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSP---VAIGPSNGS---RATCWFNF-RSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT1.1e-5565.68Show/hide
Query:  SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN---AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S +C  S+  +     S  P  L S+FLG ++    + P  +GPSNGSR TCWF F  N   AE+AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN---AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S QKA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein7.5e-5765.68Show/hide
Query:  SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN---AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S +C  S+  +     S  P  L S+FLG ++    + P  +GPSNGSR TCWF F  N   AE+AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSN---AESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA +EEI+D IL +S QKA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCG
ATGGGTCTCGCCCGTCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAG
ATGACTTCAATAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACTGC
CATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTCACCTGCACTACCTCCATAAATCTCACCCCAAGACCCTTCAATTCTCGGCCCCCATCGAAATTGGGTTCCCAGTTTCTTGGTTTTCAATCGAAGCTCCG
ATGGGTCTCGCCCGTCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTAGGTCAAATGCCGAAAGTGCCGGCATTTACGGCAGCCAGTCCCGAG
ATGACTTCAATAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGTTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAAGAGCTCCTGAGAGCTGGAGCTAAGTATGATGTGAAAGATGTAGATGGCCGAACTGC
CATTGATAGGGCTCCTAATGAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTCCAAAAGGCATGA
Protein sequenceShow/hide protein sequence
MASVTCTTSINLTPRPFNSRPPSKLGSQFLGFQSKLRWVSPVAIGPSNGSRATCWFNFRSNAESAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNEEIKDFILNFSVQKA