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Spg000094 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000094
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box/LRR-repeat protein 10
Genome locationscaffold6:23190964..23194561
RNA-Seq ExpressionSpg000094
SyntenySpg000094
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040326.1 F-box/LRR-repeat protein 10 isoform X2 [Cucumis melo var. makuwa]2.4e-2171.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CS+   C I   C   +   L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHELCLHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
KAG6589027.1 F-box/LRR-repeat protein 10, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2071.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CSI   C     C   L   L +F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHEL LHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
XP_004144867.1 F-box/LRR-repeat protein 10 isoform X1 [Cucumis sativus]1.2e-2065.56Show/hide
Query:  NLKFEYGCSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        NL     CS+   C     C   +   L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS I+LLLKPSLHELCLHNCADFSGK
Subjt:  NLKFEYGCSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
XP_023529644.1 F-box/LRR-repeat protein 10 isoform X1 [Cucurbita pepo subsp. pepo]2.0e-2071.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CSI   C     C   L   L +F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHEL LHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
XP_038888116.1 F-box/LRR-repeat protein 10 isoform X1 [Benincasa hispida]4.1e-2181.82Show/hide
Query:  LFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        L  L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHELCLHNC+DFSGK
Subjt:  LFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
TrEMBL top hitse value%identityAlignment
A0A0A0K2N0 F-box domain-containing protein5.8e-2165.56Show/hide
Query:  NLKFEYGCSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        NL     CS+   C     C   +   L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS I+LLLKPSLHELCLHNCADFSGK
Subjt:  NLKFEYGCSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
A0A1S3CP38 F-box/LRR-repeat protein 10-like isoform X19.9e-2169.88Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CS+   C I   C   +   L  F + EI PTVEFL+P+LPPNPFL SLKVDCGQLDDS IQLLLKPSLHELCLHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
A0A5A7TE11 F-box/LRR-repeat protein 10 isoform X21.2e-2171.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CS+   C I   C   +   L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHELCLHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
A0A6J1EQT5 F-box/LRR-repeat protein 10 isoform X19.9e-2171.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CSI   C     C   L   L +F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHEL LHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
A0A6J1JQ15 F-box/LRR-repeat protein 10 isoform X11.7e-2071.08Show/hide
Query:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
        CSI   C     C   L   L  F + EI PTVEFL+P+LPPNPFLRSLKVDCGQLDDS IQLLLKPSLHEL LHNCADFSGK
Subjt:  CSI--NCIILDHCMVYLF-ILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK
SwissProt top hitse value%identityAlignment
Q9SDA8 F-box/LRR-repeat protein 104.9e-0941.67Show/hide
Query:  CSI--NCIILDHCMV-YLFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK--EESGRREKKKR
        CS+   C  L  C+   L    +F +  +  ++E ++P+L PN  L SLK+DCG+L +S I +L++PSL E+ LHNC DFSG    E GR+ K  R
Subjt:  CSI--NCIILDHCMV-YLFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK--EESGRREKKKR
Arabidopsis top hitse value%identityAlignment
AT2G17020.1 F-box/RNI-like superfamily protein3.5e-1041.67Show/hide
Query:  CSI--NCIILDHCMV-YLFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK--EESGRREKKKR
        CS+   C  L  C+   L    +F +  +  ++E ++P+L PN  L SLK+DCG+L +S I +L++PSL E+ LHNC DFSG    E GR+ K  R
Subjt:  CSI--NCIILDHCMV-YLFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSLHELCLHNCADFSGK--EESGRREKKKR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGCTTGCTAGACTCTTTGGCTTCTGACGACTCTGGACTCTGGCAAAATGCTCTGGACTCTGAGTTCTCTGACTCTGACATAAAACCCAACAGAGGATTCCTCCT
CCCTCCCCGTCCAGATCTGAACGGTACATCCCGAAAACCAGATCCATCTTCCATTGAATCAACGTTGAAGAAGCTTCAATTCAATTCAACAGTCGAAAATGGCGGACGAG
GATGGCAGCGTGGAAAGCCTCGATCTCCTACCTTCTGTTTTCCTCGCTACCATCATGACCAAGCTCGATTTGCCTTCCATCTGTTCCATTGCCTCCACGTGCAGGACTTT
CCATTCCTGTGCTTCGTAGATTCTCACTTTTCTCCCCAATTTCAATCTCCTCGTAAGTCCTCTACTTCAATTTCCCCCTTGTCCAATATTAATTTCTACTTTTTAAATGA
GAATTTGAAGTTCGAATATGGTTGTTCTATTAACTGCATCATCTTGGATCATTGCATGGTTTATTTGTTTATCTTGTTTGATTTTCTGGTCAAGGAAATTTTTCCAACTG
TGGAATTTCTAAAGCCTATGCTTCCACCAAATCCTTTCCTAAGAAGCCTAAAGGTAGATTGTGGTCAGCTTGATGATTCAACGATCCAGCTTCTGTTGAAACCTTCCTTG
CATGAACTCTGTCTGCATAATTGCGCTGATTTCAGTGGGAAAGAAGAAAGTGGGAGAAGGGAGAAGAAGAAGAGAAGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGGCTTGCTAGACTCTTTGGCTTCTGACGACTCTGGACTCTGGCAAAATGCTCTGGACTCTGAGTTCTCTGACTCTGACATAAAACCCAACAGAGGATTCCTCCT
CCCTCCCCGTCCAGATCTGAACGGTACATCCCGAAAACCAGATCCATCTTCCATTGAATCAACGTTGAAGAAGCTTCAATTCAATTCAACAGTCGAAAATGGCGGACGAG
GATGGCAGCGTGGAAAGCCTCGATCTCCTACCTTCTGTTTTCCTCGCTACCATCATGACCAAGCTCGATTTGCCTTCCATCTGTTCCATTGCCTCCACGTGCAGGACTTT
CCATTCCTGTGCTTCGTAGATTCTCACTTTTCTCCCCAATTTCAATCTCCTCGTAAGTCCTCTACTTCAATTTCCCCCTTGTCCAATATTAATTTCTACTTTTTAAATGA
GAATTTGAAGTTCGAATATGGTTGTTCTATTAACTGCATCATCTTGGATCATTGCATGGTTTATTTGTTTATCTTGTTTGATTTTCTGGTCAAGGAAATTTTTCCAACTG
TGGAATTTCTAAAGCCTATGCTTCCACCAAATCCTTTCCTAAGAAGCCTAAAGGTAGATTGTGGTCAGCTTGATGATTCAACGATCCAGCTTCTGTTGAAACCTTCCTTG
CATGAACTCTGTCTGCATAATTGCGCTGATTTCAGTGGGAAAGAAGAAAGTGGGAGAAGGGAGAAGAAGAAGAGAAGAGGATGA
Protein sequenceShow/hide protein sequence
MIGLLDSLASDDSGLWQNALDSEFSDSDIKPNRGFLLPPRPDLNGTSRKPDPSSIESTLKKLQFNSTVENGGRGWQRGKPRSPTFCFPRYHHDQARFAFHLFHCLHVQDF
PFLCFVDSHFSPQFQSPRKSSTSISPLSNINFYFLNENLKFEYGCSINCIILDHCMVYLFILFDFLVKEIFPTVEFLKPMLPPNPFLRSLKVDCGQLDDSTIQLLLKPSL
HELCLHNCADFSGKEESGRREKKKRRG