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Spg000103 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000103
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:21300197..21302384
RNA-Seq ExpressionSpg000103
SyntenySpg000103
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.7e-1750Show/hide
Query:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF
        ++ ELD   I   S L  L   +  VE+ELPVPDTLPTSA+SS S+SSTW                           FSV +GST IVRGDDVCWLHAVF
Subjt:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF

Query:  RAKLAGGLGGGVTDLVSKQLAP
        RAK  GG GGGVT L S    P
Subjt:  RAKLAGGLGGGVTDLVSKQLAP

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]1.3e-1638.89Show/hide
Query:  PNFISFLHHFP-FKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVSCRVFENEELDVYFINFGSVLRKLWVLEVR--------------
        P F      FP +   +H+RE        +  G  +     S          +  VSCRVF +E+  VYFINFG VLRKLWVLEVR              
Subjt:  PNFISFLHHFP-FKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVSCRVFENEELDVYFINFGSVLRKLWVLEVR--------------

Query:  ----------------------------VEMELPVPDTLPTSADSSRSSSSTWFSVSIGSTRIVRGDDVCWLHAVFRAKL
                                    VE+ELPVPDT PTSA+SS S+SS        S  IVRGDDVCWLHAVFRAK+
Subjt:  ----------------------------VEMELPVPDTLPTSADSSRSSSSTWFSVSIGSTRIVRGDDVCWLHAVFRAKL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.7e-2736.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVSCRVF---------------
        +FQPNFISFLHHFP KLSEH  ERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  + +++               
Subjt:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVSCRVF---------------

Query:  -------ENEELD--------------------------------------------------------------VYFINFGSVLRKLWVLEVRVEMELP
               +  +LD                                                              V  +N G   R L  ++  +E+EL 
Subjt:  -------ENEELD--------------------------------------------------------------VYFINFGSVLRKLWVLEVRVEMELP

Query:  VPDTLPTSADSSRSSSSTWFSV-------------------SIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGVT
        VPDTLPTSA+SS S+SSTW                       + S  IVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSADSSRSSSSTWFSV-------------------SIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGVT

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]7.5e-1746.62Show/hide
Query:  VSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEMELPVPDTLPTSADSSRSSSSTWFS
        VSCRV ENE+  VYFIN G VLRKLWVLEVR                                          VE+ELPVPDTLPT         +  + 
Subjt:  VSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEMELPVPDTLPTSADSSRSSSSTWFS

Query:  VSIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGV
           GS  IVRGDDVCWLHAV RAK+AGG GGGV
Subjt:  VSIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.7e-1750Show/hide
Query:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF
        ++ ELD   I   S L  L   +  VE+ELPVPDTLPTSA+SS S+SSTW                           FSV +GST IVRGDDVCWLHAVF
Subjt:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF

Query:  RAKLAGGLGGGVTDLVSKQLAP
        RAK  GG GGGVT L S    P
Subjt:  RAKLAGGLGGGVTDLVSKQLAP

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase4.7e-1750Show/hide
Query:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF
        ++ ELD   I   S L  L   +  VE+ELPVPDTLPTSA+SS S+SSTW                           FSV +GST IVRGDDVCWLHAVF
Subjt:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF

Query:  RAKLAGGLGGGVTDLVSKQLAP
        RAK  GG GGGVT L S    P
Subjt:  RAKLAGGLGGGVTDLVSKQLAP

A0A5D3BQ75 Uncharacterized protein6.2e-1738.89Show/hide
Query:  PNFISFLHHFP-FKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVSCRVFENEELDVYFINFGSVLRKLWVLEVR--------------
        P F      FP +   +H+RE        +  G  +     S          +  VSCRVF +E+  VYFINFG VLRKLWVLEVR              
Subjt:  PNFISFLHHFP-FKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVSCRVFENEELDVYFINFGSVLRKLWVLEVR--------------

Query:  ----------------------------VEMELPVPDTLPTSADSSRSSSSTWFSVSIGSTRIVRGDDVCWLHAVFRAKL
                                    VE+ELPVPDT PTSA+SS S+SS        S  IVRGDDVCWLHAVFRAK+
Subjt:  ----------------------------VEMELPVPDTLPTSADSSRSSSSTWFSVSIGSTRIVRGDDVCWLHAVFRAKL

A0A5D3CAC6 Uncharacterized protein1.3e-2736.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVSCRVF---------------
        +FQPNFISFLHHFP KLSEH  ERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  + +++               
Subjt:  IFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVSCRVF---------------

Query:  -------ENEELD--------------------------------------------------------------VYFINFGSVLRKLWVLEVRVEMELP
               +  +LD                                                              V  +N G   R L  ++  +E+EL 
Subjt:  -------ENEELD--------------------------------------------------------------VYFINFGSVLRKLWVLEVRVEMELP

Query:  VPDTLPTSADSSRSSSSTWFSV-------------------SIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGVT
        VPDTLPTSA+SS S+SSTW                       + S  IVR +DVCWLHAVFRAK+AGG GGGVT
Subjt:  VPDTLPTSADSSRSSSSTWFSV-------------------SIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein3.6e-1746.62Show/hide
Query:  VSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEMELPVPDTLPTSADSSRSSSSTWFS
        VSCRV ENE+  VYFIN G VLRKLWVLEVR                                          VE+ELPVPDTLPT         +  + 
Subjt:  VSCRVFENEELDVYFINFGSVLRKLWVLEVR------------------------------------------VEMELPVPDTLPTSADSSRSSSSTWFS

Query:  VSIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGV
           GS  IVRGDDVCWLHAV RAK+AGG GGGV
Subjt:  VSIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGV

A0A5D3DSY7 Putative Retrotransposon protein4.7e-1750Show/hide
Query:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF
        ++ ELD   I   S L  L   +  VE+ELPVPDTLPTSA+SS S+SSTW                           FSV +GST IVRGDDVCWLHAVF
Subjt:  ENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTLPTSADSSRSSSSTW---------------------------FSVSIGSTRIVRGDDVCWLHAVF

Query:  RAKLAGGLGGGVTDLVSKQLAP
        RAK  GG GGGVT L S    P
Subjt:  RAKLAGGLGGGVTDLVSKQLAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTAAGTTGTAGAGTGT
TCGAAAATGAAGAGCTGGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATGGAGCTCCCAGTGCCTGATACACTG
CCAACGTCTGCTGACAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAAGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTT
TCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGACTTGGTATCAAAGCAGTTAGCTCCATGGGAAATGAGACATGGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTGAGGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTAAGTTGTAGAGTGT
TCGAAAATGAAGAGCTGGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTATTGGAAGTTAGGGTAGAGATGGAGCTCCCAGTGCCTGATACACTG
CCAACGTCTGCTGACAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAAGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTT
TCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAGACTTGGTATCAAAGCAGTTAGCTCCATGGGAAATGAGACATGGCAGTTAG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHLRERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVSCRVFENEELDVYFINFGSVLRKLWVLEVRVEMELPVPDTL
PTSADSSRSSSSTWFSVSIGSTRIVRGDDVCWLHAVFRAKLAGGLGGGVTDLVSKQLAPWEMRHGS