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Spg000121 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000121
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold6:20705288..20710070
RNA-Seq ExpressionSpg000121
SyntenySpg000121
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.9e-2948.81Show/hide
Query:  KRSSSSDHDSRK-----DKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD
        KR S+     +K     DK Q +    R R  +  P  KFEKYT T VP EQVLMEI+N  LLK+P RM ++  +R K +YCLFH DHGH+T++C  LK+
Subjt:  KRSSSSDHDSRK-----DKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD

Query:  EIEALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
        E+E LI  GYLKE++ EPKA           T++G   + P REIRTI GGP    S RKRK  VREA
Subjt:  EIEALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

XP_022152370.1 uncharacterized protein LOC111020115 [Momordica charantia]1.1e-2442.44Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNT---GLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD
        K K    S   SR D ++      R RP        +E+YTPT +P  ++L  I  +    LLK P +++ +P++R+K +YCLFHRDHGHST NC +LK 
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNT---GLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD

Query:  EIEALIQNGYLKEFIGEPKA-EADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFE
        +IE LIQ+ Y K+F+G+P++  A++   R R     R K+ P   I TIFGGP+GG S  KRK + REA  E
Subjt:  EIEALIQNGYLKEFIGEPKA-EADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.1e-3250.3Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      SR +K+ R+ +          P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++  +R K +YCLFHRDHGH+T++C  LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
         LI+ GYLKE++ EPKA           T++G   + P REIRTI GGP    S RKRKA VREA
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]2.1e-2847.93Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      S+ +K+ R   G +  P       KFEKYTPT VP EQVLMEI++  LLK+P  MK+ P++R K +YCLFHRDHGH+T +C  LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFEP
         LI+ GYLKE++ + KA          P ++  D + P REIRTI GG     S RKRKA VREA   P
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFEP

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]3.9e-3048.48Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      SR +K+ R+ +          P  KFEKYTPT VP EQVLMEI++  LLK+P RMK    +R K +YCLFHRDH H+T++   LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
         LI+ GYL+E++ EPKA           T++G  ++ P REIRTI GGP    S+RKRKA VREA
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128059.4e-3048.81Show/hide
Query:  KRSSSSDHDSRK-----DKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD
        KR S+     +K     DK Q +    R R  +  P  KFEKYT T VP EQVLMEI+N  LLK+P RM ++  +R K +YCLFH DHGH+T++C  LK+
Subjt:  KRSSSSDHDSRK-----DKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD

Query:  EIEALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
        E+E LI  GYLKE++ EPKA           T++G   + P REIRTI GGP    S RKRK  VREA
Subjt:  EIEALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

A0A6J1DDR5 uncharacterized protein LOC1110201155.3e-2542.44Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNT---GLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD
        K K    S   SR D ++      R RP        +E+YTPT +P  ++L  I  +    LLK P +++ +P++R+K +YCLFHRDHGHST NC +LK 
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNT---GLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKD

Query:  EIEALIQNGYLKEFIGEPKA-EADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFE
        +IE LIQ+ Y K+F+G+P++  A++   R R     R K+ P   I TIFGGP+GG S  KRK + REA  E
Subjt:  EIEALIQNGYLKEFIGEPKA-EADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFE

A0A6J1DWY0 uncharacterized protein LOC1110252935.3e-3350.3Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      SR +K+ R+ +          P  KFEKYTPT VP EQVLMEI++  LLK+P RMK++  +R K +YCLFHRDHGH+T++C  LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
         LI+ GYLKE++ EPKA           T++G   + P REIRTI GGP    S RKRKA VREA
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

A0A6J1DYL6 uncharacterized protein LOC1110257851.9e-3048.48Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      SR +K+ R+ +          P  KFEKYTPT VP EQVLMEI++  LLK+P RMK    +R K +YCLFHRDH H+T++   LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA
         LI+ GYL+E++ EPKA           T++G  ++ P REIRTI GGP    S+RKRKA VREA
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREA

A0A6J1DZ52 uncharacterized protein LOC1110256121.0e-2847.93Show/hide
Query:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE
        K +RS      S+ +K+ R   G +  P       KFEKYTPT VP EQVLMEI++  LLK+P  MK+ P++R K +YCLFHRDHGH+T +C  LK+E+E
Subjt:  KHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIE

Query:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFEP
         LI+ GYLKE++ + KA          P ++  D + P REIRTI GG     S RKRKA VREA   P
Subjt:  ALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFEP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTAGCCGCCTCGGTTTCGCCTAGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGTTGGCGCCGTCTGTGGGGAAGAAAGCTTGCC
AAATCTGCATATCGGTCATTCCATGAGTAAGGGGATGGAGAAGATAAATCAAGGCATAAACACAGAAAATTCGGATGGTGACCGCCACCAACGGAGGTCACGAGAAGAAG
GCCGGGATCGGCCTCGGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCG
ATGGATCATAATTTGTCCAAGATACTTTGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCAT
GGAGCACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGCATGACCAGCAAGATCAGAGGGCTCAAGCCTACTGATCGTACAATTTTGAGGAGTCCAG
AGTCAAGCACACTTAGGGGACGTGACTACACAGTTTCAACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACT
GCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAAGACAA
TCTCCCCTGGAAGACCGAGCTTCTAAACGCACTGAATGAGCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGGGACCTCGGAGACCAAGACTTGGAAGAACTAATTG
ATCGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACA
AGATGGAATTCACTCCTTCCCGATATTAAGGTAAGTAGAGCATTAGAAGGGTACGTTCTTGCTGCTGGAATTTTCGGATTCAACGTGGTTTTGTTGGCGAAACGGTCAAG
AACAACTTCTAAAGGCTTTAATCCCTGCAAACACAAGAGGTCTTCTTCATCTGACCACGATAGTAGGAAGGATAAAAAGCAACGGACCGACGAGGGAGGCCGAGGCCGAC
CAGACCGAGCACATCCCTTTGGTAAGTTCGAGAAATATACGCCAACAGCTGTTCCACAGGAGCAAGTACTGATGGAGATCCGAAATACAGGACTCCTGAAATTCCCGGGG
AGGATGAAGTCGAATCCTGATAGAAGAGACAAGAGCCAGTATTGTCTTTTCCACCGGGACCATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGC
ACTGATCCAGAATGGGTATCTGAAGGAGTTCATCGGTGAGCCCAAGGCAGAGGCCGACCAGGGATGGCCGAGGCCGAGGCCGACCAAAGATGGCCGAGACAAAGAAGAAC
CCCTACGGGAGATCAGGACCATCTTTGGAGGACCAGCTGGAGGAAGTTCAAGCAGGAAGAGGAAAGCTATTGTCAGGGAAGCAATGTTCGAACCGGAGTATAGAGTTAAA
CCACAGAGGGCCGAGGCTGACCAGAGGATGAGCCGAGGCCGAGCAGGACACACTTCCACCGATACTGAATCTGAACTTATGGAGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTAGCCGCCTCGGTTTCGCCTAGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCACGAGCAGTTGGCGCCGTCTGTGGGGAAGAAAGCTTGCC
AAATCTGCATATCGGTCATTCCATGAGTAAGGGGATGGAGAAGATAAATCAAGGCATAAACACAGAAAATTCGGATGGTGACCGCCACCAACGGAGGTCACGAGAAGAAG
GCCGGGATCGGCCTCGGACCGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCG
ATGGATCATAATTTGTCCAAGATACTTTGTATCTTGGATAAACCTGGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCAT
GGAGCACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAGCATGACCAGCAAGATCAGAGGGCTCAAGCCTACTGATCGTACAATTTTGAGGAGTCCAG
AGTCAAGCACACTTAGGGGACGTGACTACACAGTTTCAACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCCAAAACT
GCCGAATCCGAGGCCAGAGCTGCCGAAGCTGAAGCCAGGGCTGCCGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAAGACAA
TCTCCCCTGGAAGACCGAGCTTCTAAACGCACTGAATGAGCTCGGAAATCCTCAGGGAGACCTGCAGAAGTCAAGGGACCTCGGAGACCAAGACTTGGAAGAACTAATTG
ATCGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAGTCTTACA
AGATGGAATTCACTCCTTCCCGATATTAAGGTAAGTAGAGCATTAGAAGGGTACGTTCTTGCTGCTGGAATTTTCGGATTCAACGTGGTTTTGTTGGCGAAACGGTCAAG
AACAACTTCTAAAGGCTTTAATCCCTGCAAACACAAGAGGTCTTCTTCATCTGACCACGATAGTAGGAAGGATAAAAAGCAACGGACCGACGAGGGAGGCCGAGGCCGAC
CAGACCGAGCACATCCCTTTGGTAAGTTCGAGAAATATACGCCAACAGCTGTTCCACAGGAGCAAGTACTGATGGAGATCCGAAATACAGGACTCCTGAAATTCCCGGGG
AGGATGAAGTCGAATCCTGATAGAAGAGACAAGAGCCAGTATTGTCTTTTCCACCGGGACCATGGACATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGC
ACTGATCCAGAATGGGTATCTGAAGGAGTTCATCGGTGAGCCCAAGGCAGAGGCCGACCAGGGATGGCCGAGGCCGAGGCCGACCAAAGATGGCCGAGACAAAGAAGAAC
CCCTACGGGAGATCAGGACCATCTTTGGAGGACCAGCTGGAGGAAGTTCAAGCAGGAAGAGGAAAGCTATTGTCAGGGAAGCAATGTTCGAACCGGAGTATAGAGTTAAA
CCACAGAGGGCCGAGGCTGACCAGAGGATGAGCCGAGGCCGAGCAGGACACACTTCCACCGATACTGAATCTGAACTTATGGAGTTTTAG
Protein sequenceShow/hide protein sequence
MLLAASVSPSLSRNASEFLKTLGARAVGAVCGEESLPNLHIGHSMSKGMEKINQGINTENSDGDRHQRRSREEGRDRPRTESPRPRSPLPSSREKQADLKFAALENKVSA
MDHNLSKILCILDKPGPSTKTPDERLVRDPRKGKEPMEHTAESETRSKGKKTSSMTSKIRGLKPTDRTILRSPESSTLRGRDYTVSTPSYGHTKTDLRNLIEEKRRSAKT
AESEARAAEAEARAAEAEARAAEAEARLAEAEAKKDNLPWKTELLNALNELGNPQGDLQKSRDLGDQDLEELIDRDCPLICTGESGLFADSISLPFWGQDRVGSWEHSLT
RWNSLLPDIKVSRALEGYVLAAGIFGFNVVLLAKRSRTTSKGFNPCKHKRSSSSDHDSRKDKKQRTDEGGRGRPDRAHPFGKFEKYTPTAVPQEQVLMEIRNTGLLKFPG
RMKSNPDRRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFIGEPKAEADQGWPRPRPTKDGRDKEEPLREIRTIFGGPAGGSSSRKRKAIVREAMFEPEYRVK
PQRAEADQRMSRGRAGHTSTDTESELMEF