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Spg000152 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000152
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:20987819..20991433
RNA-Seq ExpressionSpg000152
SyntenySpg000152
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019170525.1 PREDICTED: uncharacterized protein LOC109166091 [Ipomoea nil]7.9e-0631.31Show/hide
Query:  PETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEF
        PET  H+F+EC +V ++W         +G LD +    V     +W S+  +  D  ++  SL ICW +W  RNE     +   MEMLK+ +   + E+
Subjt:  PETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEF

XP_019178363.1 PREDICTED: uncharacterized protein LOC109173576 [Ipomoea nil]1.7e-0822.75Show/hide
Query:  PETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEF-
        PET  H+F+EC +V ++W+     S +  V              +W S+  +  D  ++  SL ICW +W  RNE     +   MEMLK+ +   + E+ 
Subjt:  PETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEF-

Query:  --------LKPEDTHLGIPRSGQMG---------GERHQQISSS-----SDTHRPPPLQIE-----------------TDALRVVRLLSNEEVDATELGS
                +    T L    +G +G         G R+    S       D H    + I+                 +D   V R ++++  D++  G+
Subjt:  --------LKPEDTHLGIPRSGQMG---------GERHQQISSS-----SDTHRPPPLQIE-----------------TDALRVVRLLSNEEVDATELGS

Query:  FIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDF
         I + + +      V+I+  SR  N  AH LA+ A        W +  P  +  F
Subjt:  FIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.0e-0541.77Show/hide
Query:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWL
        PL IETD+  V  LL+ +  D T+ G  + E   +  S  I+      R  NG AH LAQ+A  L+ S IWV  FP WL
Subjt:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWL

XP_030973284.1 uncharacterized protein LOC115993135 [Quercus lobata]3.0e-0531.76Show/hide
Query:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCS
        +E D+L+V++ L+N + + T+LG  I + Q + + ++  N  H  R  N LAH LA++A     +++W+ + P+ L+D  + D S
Subjt:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCS

XP_030973303.1 uncharacterized protein LOC115993151 [Quercus lobata]3.0e-0531.76Show/hide
Query:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCS
        +E D+L+V++ L+N + + T+LG  I + Q + + ++  N  H  R  N LAH LA++A     +++W+ + P+ L+D  + D S
Subjt:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCS

TrEMBL top hitse value%identityAlignment
A0A1R3GNW3 Reverse transcriptase1.5e-0531.11Show/hide
Query:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCSIGSEA
        IE DAL ++R +++  +D + +G+++ EA+++        +QH  R  N +AH LA+    L    +W+ D P WL D  + DC   S +
Subjt:  IETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCSIGSEA

A0A2N9GVR0 RNase H domain-containing protein1.2e-0422.46Show/hide
Query:  ETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEFL-
        E   H  W C+ +S++W +   F      +  N S+ V   ++    +  D   +Q   T    CW IW   N    ++   D      R   Y+ EF+ 
Subjt:  ETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWRSNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEFL-

Query:  -----KPEDTH----------------------LGIPRSGQMGGERHQQISSSSDTHRPPPLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLR
             KPE                              SG +     + I  + +      ++ E DA  V+R L   +   T  G  I +A+A++   +
Subjt:  -----KPEDTH----------------------LGIPRSGQMGGERHQQISSSSDTHRPPPLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLR

Query:  IVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFP
          ++ HT R  N +AH LA++A +  +S IW+ + P
Subjt:  IVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFP

A0A6J1DNV9 uncharacterized protein LOC1110224035.0e-0641.77Show/hide
Query:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWL
        PL IETD+  V  LL+ +  D T+ G  + E   +  S  I+      R  NG AH LAQ+A  L+ S IWV  FP WL
Subjt:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWL

A0A7J6ERF5 Uncharacterized protein2.5e-0532.56Show/hide
Query:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELD
        P++I++D   +V  + N++   T + + I + +  M  L   +I H +R NN  AH+LA+K    +T++I+   FPRWL  F   D
Subjt:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELD

A0A803PLN3 Uncharacterized protein4.2e-0531.4Show/hide
Query:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELD
        PL+I++D   +V  + + + + + + + + + +  M S    NI H  R NN  AH+LA+K    +T++I+   FPRWL  F + D
Subjt:  PLQIETDALRVVRLLSNEEVDATELGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGAAAAGACCCGAAACAGCAGCACATTTGTTTTGGGAAT
GCAGAAAGGTTAGTGAGTTGTGGATAACTTTTTGCCCGTTTTCTCATAGAATTGGTGTTCTGGACAGGAATGGGTCGAATCCAGTAGAGCATTTTGTTCGAATATGGAGG
AGCAATGGAGGTGATTCTGTTGATAAGCAAAGATTGGCTACTAGCCTCATGATTTGCTGGCAAATTTGGTCGCATAGAAACGAGGTGACTCGACGGATTAAGCAGATGGA
CATGGAGATGTTAAAGGAGCGAATCAGCAAGTACATCGCGGAATTTTTAAAGCCTGAAGACACTCACCTGGGAATTCCTCGAAGCGGTCAGATGGGAGGCGAGCGTCATC
AGCAAATTTCGTCTTCGAGCGATACCCACAGACCTCCTCCTCTGCAAATCGAAACTGATGCTTTGCGAGTGGTGCGGCTCTTGTCTAACGAAGAGGTTGATGCAACTGAA
CTGGGAAGTTTCATAATGGAAGCTCAAGCAATTATGTCTTCTCTCCGGATTGTTAATATCCAACACACTTCAAGGTTCAATAATGGGTTGGCCCATCTATTGGCCCAAAA
AGCTTGTGAATTACAAACCTCTGAAATTTGGGTTACTGACTTTCCTAGGTGGCTCTTAGATTTTAATGAGTTAGATTGTAGTATCGGTTCTGAAGCTTGTGGGGGCCCAT
GTCCCATAAGTGGTACTGTTTTGGGAGCCCTTTCTGGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATA
TTGGTCTAGATCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGGAAAAGACCCGAAACAGCAGCACATTTGTTTTGGGAAT
GCAGAAAGGTTAGTGAGTTGTGGATAACTTTTTGCCCGTTTTCTCATAGAATTGGTGTTCTGGACAGGAATGGGTCGAATCCAGTAGAGCATTTTGTTCGAATATGGAGG
AGCAATGGAGGTGATTCTGTTGATAAGCAAAGATTGGCTACTAGCCTCATGATTTGCTGGCAAATTTGGTCGCATAGAAACGAGGTGACTCGACGGATTAAGCAGATGGA
CATGGAGATGTTAAAGGAGCGAATCAGCAAGTACATCGCGGAATTTTTAAAGCCTGAAGACACTCACCTGGGAATTCCTCGAAGCGGTCAGATGGGAGGCGAGCGTCATC
AGCAAATTTCGTCTTCGAGCGATACCCACAGACCTCCTCCTCTGCAAATCGAAACTGATGCTTTGCGAGTGGTGCGGCTCTTGTCTAACGAAGAGGTTGATGCAACTGAA
CTGGGAAGTTTCATAATGGAAGCTCAAGCAATTATGTCTTCTCTCCGGATTGTTAATATCCAACACACTTCAAGGTTCAATAATGGGTTGGCCCATCTATTGGCCCAAAA
AGCTTGTGAATTACAAACCTCTGAAATTTGGGTTACTGACTTTCCTAGGTGGCTCTTAGATTTTAATGAGTTAGATTGTAGTATCGGTTCTGAAGCTTGTGGGGGCCCAT
GTCCCATAAGTGGTACTGTTTTGGGAGCCCTTTCTGGCTCTTAG
Protein sequenceShow/hide protein sequence
MGSWEHNRTRWNSLLPDFREADESGVTDTREGLTSRYWSRSVDTENMSAVRRVQLSIRSHWKRPETAAHLFWECRKVSELWITFCPFSHRIGVLDRNGSNPVEHFVRIWR
SNGGDSVDKQRLATSLMICWQIWSHRNEVTRRIKQMDMEMLKERISKYIAEFLKPEDTHLGIPRSGQMGGERHQQISSSSDTHRPPPLQIETDALRVVRLLSNEEVDATE
LGSFIMEAQAIMSSLRIVNIQHTSRFNNGLAHLLAQKACELQTSEIWVTDFPRWLLDFNELDCSIGSEACGGPCPISGTVLGALSGS