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Spg000159 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000159
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:21117284..21121433
RNA-Seq ExpressionSpg000159
SyntenySpg000159
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039558.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-0547.62Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ
        ES K  + +K+NPL+++    S + K   NP VMSVMM D+  +  MAEMERK+N LMKA  +
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ

KAA0058489.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-0554.1Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAV
        ESSK+ + +++NPLFE+ TPTS+  +   +  V+SVMMVDV     MAE+ERK+N LMKAV
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAV

KAA0060617.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0537.93Show/hide
Query:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS
        I K + ESSK  + +K+NPL+++   T  + K   +P +MSVMMVD+  +  M+EMERK+N LMK V +    ++  ++ +R  E +
Subjt:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0539.08Show/hide
Query:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS
        I K + ES K  + +K+NPL+++   +S + K   +P VMSVMM D+  +  MAEMERK+N LMKAV +    ++  ++ +R  E +
Subjt:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS

XP_038896620.1 aspartic proteinase Asp1-like [Benincasa hispida]1.2e-0550.79Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ
        E  K ++ +K+NPLFE+ T T + P+   +P+V+SVMM DV  +  MAEMERK+N LMKAV +
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein1.7e-0547.62Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ
        ES K  + +K+NPL+++    S + K   NP VMSVMM D+  +  MAEMERK+N LMKA  +
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ

A0A5A7U1Y2 Ty3-gypsy retrotransposon protein2.2e-0547.62Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ
        ES K ++ +K+NPL+++    S + K   +P VMSVMMVD+  +  MAEMERK+N LMK V +
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ

A0A5A7UY90 Retrotransposon gag protein2.2e-0554.1Show/hide
Query:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAV
        ESSK+ + +++NPLFE+ TPTS+  +   +  V+SVMMVDV     MAE+ERK+N LMKAV
Subjt:  ESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAV

A0A5A7V1D2 Ty3-gypsy retrotransposon protein2.2e-0537.93Show/hide
Query:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS
        I K + ESSK  + +K+NPL+++   T  + K   +P +MSVMMVD+  +  M+EMERK+N LMK V +    ++  ++ +R  E +
Subjt:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS

A0A5D3BY54 Ty3-gypsy retrotransposon protein5.8e-0639.08Show/hide
Query:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS
        I K + ES K  + +K+NPL+++   +S + K   +P VMSVMM D+  +  MAEMERK+N LMKAV +    ++  ++ +R  E +
Subjt:  ISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQ---SVLGSKQPVRCEEVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCAAAATTGATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGTTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATACACTAAA
TCCTCATGTGATGTCTGTCATGATGGTTGACGTAGACCAAGATGAAAGGATGGCAGAGATGGAAAGAAAACTCAATCACCTAATGAAGGCAGTAGCCCAGTCGGTTTTGG
GGTCAAAACAGCCGGTTAGGTGTGAAGAAGTCTCGTTCAAAACGACCCGCAGACGACTCGGAACTGCCTCTGTTTTTCCAGAAATGCTGTCGCATTTCATTTTGCCTTCC
CAGAAATGCAGTTCTGGATATCTAACTACGAGCAAAGTTCACAAGCTTGGAATGATACTCACTTCCCTAAGTAAACCTTTCATGCAGTGGCAAACCATGGGTGTCATGAA
TGCCCCTGGTTACTCAATAAAATCTAGGAAGGAGGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCAAAATTGATTGAAGAATCCTCTAAGGAAAAGGTTGCAGTCAAAGACAACCCGTTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATACACTAAA
TCCTCATGTGATGTCTGTCATGATGGTTGACGTAGACCAAGATGAAAGGATGGCAGAGATGGAAAGAAAACTCAATCACCTAATGAAGGCAGTAGCCCAGTCGGTTTTGG
GGTCAAAACAGCCGGTTAGGTGTGAAGAAGTCTCGTTCAAAACGACCCGCAGACGACTCGGAACTGCCTCTGTTTTTCCAGAAATGCTGTCGCATTTCATTTTGCCTTCC
CAGAAATGCAGTTCTGGATATCTAACTACGAGCAAAGTTCACAAGCTTGGAATGATACTCACTTCCCTAAGTAAACCTTTCATGCAGTGGCAAACCATGGGTGTCATGAA
TGCCCCTGGTTACTCAATAAAATCTAGGAAGGAGGAGTAA
Protein sequenceShow/hide protein sequence
MISKLIEESSKEKVAVKDNPLFESVTPTSEQPKDTLNPHVMSVMMVDVDQDERMAEMERKLNHLMKAVAQSVLGSKQPVRCEEVSFKTTRRRLGTASVFPEMLSHFILPS
QKCSSGYLTTSKVHKLGMILTSLSKPFMQWQTMGVMNAPGYSIKSRKEE