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Spg000164 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000164
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:20970655..20976579
RNA-Seq ExpressionSpg000164
SyntenySpg000164
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-1657.14Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFD-YSTSSSEQGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D Y++ S    +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIA LKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFD-YSTSSSEQGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1760.71Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q ++P +GG+V++ENP+ D   SSSE+  +ET  P++MSV+   + T + RM ELE+KINMLMKAVEERDYEIASLKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.3e-1658.33Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE+  +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIA LKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1759.52Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE+  +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIASLKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

TYK29782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-1658.33Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSE-QGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE   +E   P++MSVM+  + T E RMAELE+K+NMLMK VEERDYEIA LKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSE-QGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein1.0e-1657.14Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFD-YSTSSSEQGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D Y++ S    +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIA LKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFD-YSTSSSEQGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

A0A5A7T6D4 Ty3-gypsy retrotransposon protein9.4e-1860.71Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q ++P +GG+V++ENP+ D   SSSE+  +ET  P++MSV+   + T + RM ELE+KINMLMKAVEERDYEIASLKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

A0A5A7TZU9 Ribonuclease H6.1e-1758.33Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE+  +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIA LKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.2e-1759.52Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE+  +E   P++MSVM+  + T E+RMAELE+K+NMLMKAVEERD+EIASLKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSEQ-GKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

A0A5D3C4W1 Ty3-gypsy retrotransposon protein1.4e-1658.33Show/hide
Query:  IWTQMAEPNQGGMVMQENPLFDYSTSSSE-QGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE
        IW Q+++P +GG+V++ENP  D   S SE   +E + P++MSVM+  + T E RM ELE+K+NMLMK VEERDYEIASLKNHIE
Subjt:  IWTQMAEPNQGGMVMQENPLFDYSTSSSE-QGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGGACTCAAATGGCAGAGCCAAACCAAGGCGGGATGGTCATGCAGGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAGGGAAAAGAGACATCAGA
TCCTGACGTGATGTCTGTAATGATGGCCGGCATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGAAAGATCAACATGCTGATGAAGGCGGTTGAGGAAAGAGATT
ATGAAATTGCATCTCTGAAGAATCACATAGAAAGAATCTTAATCCAATTTGGTACCTTCGAACCTATTATTGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCTA
GAAAGAGCTCTCTATGATGAAGATCTTCAAGAAAAGATTAGGAAAATTGAAGACAAAGCTGGAGGCTGGACACTCGTAACCCGACGGAAGAAGCGAAAGCAAAATTGGGT
TCAGAAGGAATCTCGTTTGTTTCAAGGAACACAAAAGAAAAAGCAGGCCACGAAGGAAAAATGGGAAGAAGCATACAAGAAGGCTCAAGCTTATCTTAGAGGAATGCTTG
GCATCTTCATCAGTCATGACAAAGGCACACTGAATATTGGTGATCTCTTCACGGGCTTTGGCAACCTCGAGTCTCTACTGCTCCAAAGTCTTCTTCACCATCACAAAATA
AATTGGAAAACCTTTCATGCTTGGCTATCGTTGTCTCTAGTTTTGTCTCTGGTTCCTTTATCTCCAAGGATGATTGTGCAAGCTGCTGGCTTCACTCGTTTCAAGTTCAA
GTTCGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCATTCC
TCACTGCAAGTACTTCAAGTTCCAATTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATCACTTCAAGTACTTCAAGTTCAAATTTGGGGCTTCGCTCGTTTC
AACTCCAAGTTCAAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTGGAGGCTTCACTTTTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCA
AGTACAAGACTTCACTTGTCTCAAGTTCAAGTTCAAGCTTTCATCAAGTTATAGCTTGAGCTTTCCTCACTTCGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTC
ATGTACTTCAAGTTCAAATTTGGGGCTTCGTTCGTTTCAACTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTGGAGGCTTCACTTGTTTCAAGTTC
GAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACATCATGTTCAAGCTTTCATCAAGTTACAGTTTGAGCTTTCCTCACTT
CGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTCATGTACTTCAAGTTCAAATTTGGGGCTTCGCTCGTTTCAACTTCAAGTTCGAGCTTTCCTCACTTCAAGTAC
TCCAAGTTCAAGTTGGAGGCTTGACTTGTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACTTCAAGTTC
AAGCTTTCGTCAAGTTACAGTTTGAGCTTTCCTCACTTCGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTCAAGTACTTCAAGTTCAAATTTGGGGCTTAGCTCG
TTTCAACTCCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTTGGGGCTTCACTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAG
TTCAAGTTGGAGGCTTGACTTGTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACATCAAGTTCAAGCTT
TCCTCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATATGGACTCAAATGGCAGAGCCAAACCAAGGCGGGATGGTCATGCAGGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAGGGAAAAGAGACATCAGA
TCCTGACGTGATGTCTGTAATGATGGCCGGCATAGGTACAGGCGAAGAAAGAATGGCTGAACTGGAAAGAAAGATCAACATGCTGATGAAGGCGGTTGAGGAAAGAGATT
ATGAAATTGCATCTCTGAAGAATCACATAGAAAGAATCTTAATCCAATTTGGTACCTTCGAACCTATTATTGTTTGGTCTCAACCAGAGGCCCCAGGAAATGACTTCCTA
GAAAGAGCTCTCTATGATGAAGATCTTCAAGAAAAGATTAGGAAAATTGAAGACAAAGCTGGAGGCTGGACACTCGTAACCCGACGGAAGAAGCGAAAGCAAAATTGGGT
TCAGAAGGAATCTCGTTTGTTTCAAGGAACACAAAAGAAAAAGCAGGCCACGAAGGAAAAATGGGAAGAAGCATACAAGAAGGCTCAAGCTTATCTTAGAGGAATGCTTG
GCATCTTCATCAGTCATGACAAAGGCACACTGAATATTGGTGATCTCTTCACGGGCTTTGGCAACCTCGAGTCTCTACTGCTCCAAAGTCTTCTTCACCATCACAAAATA
AATTGGAAAACCTTTCATGCTTGGCTATCGTTGTCTCTAGTTTTGTCTCTGGTTCCTTTATCTCCAAGGATGATTGTGCAAGCTGCTGGCTTCACTCGTTTCAAGTTCAA
GTTCGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCATTCC
TCACTGCAAGTACTTCAAGTTCCAATTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATCACTTCAAGTACTTCAAGTTCAAATTTGGGGCTTCGCTCGTTTC
AACTCCAAGTTCAAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTGGAGGCTTCACTTTTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCA
AGTACAAGACTTCACTTGTCTCAAGTTCAAGTTCAAGCTTTCATCAAGTTATAGCTTGAGCTTTCCTCACTTCGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTC
ATGTACTTCAAGTTCAAATTTGGGGCTTCGTTCGTTTCAACTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTGGAGGCTTCACTTGTTTCAAGTTC
GAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACATCATGTTCAAGCTTTCATCAAGTTACAGTTTGAGCTTTCCTCACTT
CGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTCATGTACTTCAAGTTCAAATTTGGGGCTTCGCTCGTTTCAACTTCAAGTTCGAGCTTTCCTCACTTCAAGTAC
TCCAAGTTCAAGTTGGAGGCTTGACTTGTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACTTCAAGTTC
AAGCTTTCGTCAAGTTACAGTTTGAGCTTTCCTCACTTCGAGTACTTCAAGTTCAAGTTCAAGCTTTCATCACTTCAAGTACTTCAAGTTCAAATTTGGGGCTTAGCTCG
TTTCAACTCCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAGTTCAAGTTTGGGGCTTCACTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCCAAG
TTCAAGTTGGAGGCTTGACTTGTTTCAAGTTCGAGTTCAAATTTTCCTCAATTAAAGTAATTCAAATTCAAGTACAAGACTTCACTTGTTTCAACATCAAGTTCAAGCTT
TCCTCACTTTAA
Protein sequenceShow/hide protein sequence
MIWTQMAEPNQGGMVMQENPLFDYSTSSSEQGKETSDPDVMSVMMAGIGTGEERMAELERKINMLMKAVEERDYEIASLKNHIERILIQFGTFEPIIVWSQPEAPGNDFL
ERALYDEDLQEKIRKIEDKAGGWTLVTRRKKRKQNWVQKESRLFQGTQKKKQATKEKWEEAYKKAQAYLRGMLGIFISHDKGTLNIGDLFTGFGNLESLLLQSLLHHHKI
NWKTFHAWLSLSLVLSLVPLSPRMIVQAAGFTRFKFKFELSSLQVLQVQAFIASSTLSSSSRLRSFQVQVRAFLTASTSSSNSIFAHFKFKFKLSSLQVLQVQIWGFARF
NSKFKLSSLQVLQVQVGGFTFFKFEFKFSSIKVIQIQVQDFTCLKFKFKLSSSYSLSFPHFEYFKFKFKLSSLHVLQVQIWGFVRFNFKFELSSLQVLQVQVGGFTCFKF
EFKFSSIKVIQIQVQDFTCFNIMFKLSSSYSLSFPHFEYFKFKFKLSSLHVLQVQIWGFARFNFKFELSSLQVLQVQVGGLTCFKFEFKFSSIKVIQIQVQDFTCFNFKF
KLSSSYSLSFPHFEYFKFKFKLSSLQVLQVQIWGLARFNSKFELSSLQVLQVQVWGFTHFKFKFELSSLQVLQVQVGGLTCFKFEFKFSSIKVIQIQVQDFTCFNIKFKL
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