; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000167 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000167
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:21179140..21182034
RNA-Seq ExpressionSpg000167
SyntenySpg000167
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-3352.73Show/hide
Query:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ
        +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRIKP TTR  VFQR+SM   EEENQC +ST AR SAF+RLS+STSKK +
Subjt:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF
        PSTS FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL V   F
Subjt:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-3445.75Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   D D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3344.34Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   + D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-3353.94Show/hide
Query:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ
        +++H   +++    + + IA++ +  ++      KEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   EEENQC  ST AR S F+RLS+STSKK +
Subjt:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF
        PSTS FDRL++T+DQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL +   F
Subjt:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3344.34Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   + D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.6e-3352.73Show/hide
Query:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ
        +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRIKP TTR  VFQR+SM   EEENQC +ST AR SAF+RLS+STSKK +
Subjt:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF
        PSTS FDRL++T+DQ +R+M + + K F E N+D+K+HS +PSRMKRK SV INTEGSL V   F
Subjt:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF

A0A5A7TQ06 Retrotransposon gag protein1.4e-3445.75Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   D D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EEENQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+HS +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

A0A5A7UI09 Retrotransposon gag protein1.6e-3344.34Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   + D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

A0A5A7VDY3 Ty3-gypsy retrotransposon protein5.3e-3453.94Show/hide
Query:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ
        +++H   +++    + + IA++ +  ++      KEVDNS + +QRTSVFDRIKP TTR SVFQR+SM   EEENQC  ST AR S F+RLS+STSKK +
Subjt:  MQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQ

Query:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF
        PSTS FDRL++T+DQ +R+M  L+ K F E N+D+K+HS +PSRMKRK SV INTEGSL +   F
Subjt:  PSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKVLTHF

A0A5D3CCI8 Retrotransposon gag protein1.6e-3344.34Show/hide
Query:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI
        + G I+ +      K + K  P+   + D +    + T       + +++H   +++    + + I ++ +  ++      +EVDNS + +QRTSVFDRI
Subjt:  ASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKEVDNSEKGEQRTSVFDRI

Query:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI
        KP TTR SVFQR+SM   EE+NQC  ST AR SAF+RLS+STSKK +PSTS FDRL++T+DQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK SV I
Subjt:  KPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLI

Query:  NTEGSLKVLTHF
        NTEGSL V   F
Subjt:  NTEGSLKVLTHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTCTTACACGGGTTCTACTACCCATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGAC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAACGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAAGAA
GTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGA
AGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCG
AAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAG
AGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTT
CCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTATTCGCTAAGTTCGAAGGTTCACACG
TTGCGCTGTTCCATCACCAAATTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCT
TTAAGTTTGAAGGTTCCCACATGTGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGTTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCAT
GCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTCTTACACGGGTTCTACTACCCATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGAC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAACGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAAGAA
GTTGATAATTCTGAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGA
AGAAAATCAATGTTCGGTGTCCACCTCCGCTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCCAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCG
AAGTAACAAGCGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAG
AGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTTCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCACTGCAGTT
CCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTACGAAGGTTCACACGTTGCGCTGCTTATTCGCTAAGTTCGAAGGTTCACACG
TTGCGCTGTTCCATCACCAAATTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCTTCAAGTTCGAAGGTTCTCATGCTACGCTAGGTTGCACTATTGTGCTACTTCCTTCT
TTAAGTTTGAAGGTTCCCACATGTGCTGTTGTGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGTTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCAT
GCGCTTCGTTGCAGTTCCTTCTCTTCAAGTTTGA
Protein sequenceShow/hide protein sequence
MNNSYTGSTTHCCFNEMRLQEDKAPIIASGEITLQGTCTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEENDSQIAQLKSQIENQHIAESKE
VDNSEKGEQRTSVFDRIKPPTTRPSVFQRMSMVATEEENQCSVSTSARPSAFQRLSVSTSKKSQPSTSVFDRLEVTSDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMK
RKFSVLINTEGSLKVLTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALRCSPFCSSTKVHTLRCLFAKFEGSHVALFHHQIRRFSRCAASFFKFEGSHATLGCTIVLLPS
LSLKVPTCAVVLLPSPSSKVLTLRCFAVPSPSSKILMRFVAVPSLQV