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Spg000169 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000169
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold6:23602246..23604164
RNA-Seq ExpressionSpg000169
SyntenySpg000169
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.5e-1350.48Show/hide
Query:  LSYTEGTKRPRENRSSLQTRKLAKA-----------------VEIELPVPDTLPTSTESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        +S  E  + PR NR SLQT +L K                  VEIELPV DTLP S ESS S+S S         + EDDV WLH +FR K AGGPGGGV
Subjt:  LSYTEGTKRPRENRSSLQTRKLAKA-----------------VEIELPVPDTLPTSTESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  TTWYQ
        TTWYQ
Subjt:  TTWYQ

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1152.81Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        VEIELPVPD LPTS ESSRS+SS+   ++ E   V +                        DDV WLHAIFR K AGGPGGGVTTWYQS
Subjt:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-1242.75Show/hide
Query:  FGLSYTEGTKRPRENRSSLQTRKLAK-----------------AVEIELPVPDTLPTSTESSRSSSSSMFQ-----------------------------
        FGL Y EGTKRPR NR+SLQT +L K                  VEIELPVPDTLPTS ESS S+SS+  +                             
Subjt:  FGLSYTEGTKRPRENRSSLQTRKLAK-----------------AVEIELPVPDTLPTSTESSRSSSSSMFQ-----------------------------

Query:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
         G    +  D+V WLHA+F  K AGGPGGGV
Subjt:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.1e-1239.07Show/hide
Query:  AKAAIAEAKFNLSTSGFCFGLSYTEGTK----------------------RPRENRSSLQTRKLAKAVEIELPVPDTLPTSTESSRSSSSSMFQ------
        AK AIAE+  N       FGLSY E  +                       PR NR +L T KL K VEIELPVPDTLPTS ESS+S+SS+  +      
Subjt:  AKAAIAEAKFNLSTSGFCFGLSYTEGTK----------------------RPRENRSSLQTRKLAKAVEIELPVPDTLPTSTESSRSSSSSMFQ------

Query:  --------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
                            EG    +  DD+ WLHA+F  K AG PGGGV
Subjt:  --------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1152.81Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        VEIELPVPD LPTS ESSRS+SS+   ++ E   V +                        DDV WLHAIFR K AGGPGGGVTTWYQS
Subjt:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.6e-1252.81Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        VEIELPVPD LPTS ESSRS+SS+   ++ E   V +                        DDV WLHAIFR K AGGPGGGVTTWYQS
Subjt:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.8e-1342.75Show/hide
Query:  FGLSYTEGTKRPRENRSSLQTRKLAK-----------------AVEIELPVPDTLPTSTESSRSSSSSMFQ-----------------------------
        FGL Y EGTKRPR NR+SLQT +L K                  VEIELPVPDTLPTS ESS S+SS+  +                             
Subjt:  FGLSYTEGTKRPRENRSSLQTRKLAK-----------------AVEIELPVPDTLPTSTESSRSSSSSMFQ-----------------------------

Query:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
         G    +  D+V WLHA+F  K AGGPGGGV
Subjt:  EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein3.0e-1239.07Show/hide
Query:  AKAAIAEAKFNLSTSGFCFGLSYTEGTK----------------------RPRENRSSLQTRKLAKAVEIELPVPDTLPTSTESSRSSSSSMFQ------
        AK AIAE+  N       FGLSY E  +                       PR NR +L T KL K VEIELPVPDTLPTS ESS+S+SS+  +      
Subjt:  AKAAIAEAKFNLSTSGFCFGLSYTEGTK----------------------RPRENRSSLQTRKLAKAVEIELPVPDTLPTSTESSRSSSSSMFQ------

Query:  --------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
                            EG    +  DD+ WLHA+F  K AG PGGGV
Subjt:  --------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.2e-1350.48Show/hide
Query:  LSYTEGTKRPRENRSSLQTRKLAKA-----------------VEIELPVPDTLPTSTESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV
        +S  E  + PR NR SLQT +L K                  VEIELPV DTLP S ESS S+S S         + EDDV WLH +FR K AGGPGGGV
Subjt:  LSYTEGTKRPRENRSSLQTRKLAKA-----------------VEIELPVPDTLPTSTESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGV

Query:  TTWYQ
        TTWYQ
Subjt:  TTWYQ

A0A5D3BTP3 Reverse transcriptase6.6e-1252.81Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS
        VEIELPVPD LPTS ESSRS+SS+   ++ E   V +                        DDV WLHAIFR K AGGPGGGVTTWYQS
Subjt:  VEIELPVPDTLPTSTESSRSSSSS---MFQEGQRVSL----------------------EEDDVRWLHAIFRTKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATATAGCTCAAGCAAAGGCAGCCATAGCAGAAGCTAAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGAAAA
TAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGGCTGTAGAGATCGAACTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGCTCCAGTTCAA
TGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGG
TATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
GATATAGCTCAAGCAAAGGCAGCCATAGCAGAAGCTAAGTTCAACCTGTCTACCTCTGGTTTTTGTTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGAAAA
TAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGGCTGTAGAGATCGAACTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTCCAGATCAAGCTCCAGTTCAA
TGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGG
TATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
DIAQAKAAIAEAKFNLSTSGFCFGLSYTEGTKRPRENRSSLQTRKLAKAVEIELPVPDTLPTSTESSRSSSSSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTTW
YQSS