CuGenDBv2

Gene ID	Spg000179
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Genome location	scaffold6:22526093..22530277
RNA-Seq Expression	Spg000179
Synteny	Spg000179
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]

1.4e-32

61.76

Show/hide

Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR  VFQR+SMA  EEE+QC +ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M + + K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]

1.2e-33

63.24

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Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.1e-32

61.76

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Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR S+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N D+K+HS +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]

8.1e-33

61.76

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Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+H+ +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]

8.1e-33

61.76

Show/hide

Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+H+ +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TQ06 Retrotransposon gag protein

6.0e-34

63.24

Show/hide

Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+HS +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5A7UI09 Retrotransposon gag protein

3.9e-33

61.76

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Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+H+ +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5A7VDY3 Ty3-gypsy retrotransposon protein

6.7e-33

62.5

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Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   +EVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R S F+RL +STSKK++ STS FD LK+TNDQ +R+M  L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+HS +PSRMKRK SV INTEGSL  L P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5D3BBF9 Gag protease polyprotein

5.1e-33

61.76

Show/hide

Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR S+FDRIKP TTR  VFQR+SMA  EEE+QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N D+K+HS +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

A0A5D3CCI8 Retrotransposon gag protein

3.9e-33

61.76

Show/hide

Query:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE
        Y   EEVDNS + +QR SVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSKK++ STS FD LK+TNDQ +R+M +L+ K F E
Subjt:  YVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDE

Query:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF
         N+D+K+H+ +PSRMKRK SV INTEGSL  + P+F
Subjt:  VNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGTTGAGCCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAAGGGTTCTCCTCCATTTCAA
GGGTTCAGAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAGTTCAGAGTTTCAAAGCTCTCAAGCAGAACCAGAGAATTCAGAGAGACTCCACCAAG
GGGCATATACTAATGACAAGTTTCTTGTTAAGTATAAACCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATG
GCTGAGATGCAGGAACACATCAACTCCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAG
TCAAACCCAAGAAAAAGAGAACTTTGCAACTTCCTACTACGTCGACGTAGAAGAGGTTGACAATTCCAAGAAGGGTGAACAAAGGATCTCCGTCTTCGATCGCATCAAGC
CTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGGCCGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTA
GGTGTCTCCACATCGAAGAAAAACCAATTTTCAACATCTGTATTTGATTGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTT
CGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCCTTCTCCCCA
AGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAG
TTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGC
AGATCCTTCTCCCAAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCATTCTCTCCAAGTTCGAAG
ATTCTCATGCGCTTCGTTGCAGTCCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGTTGCGCTGCTTCCTTCTCCA
AGTTCGAAGGTTCCCACATTGTGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTACTTCCTTCACCAAGTTCGAAGGTTCTCATGCTGCGCTG
TTTCGCTGTTCCTTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTCGCAGTTCCTTCTCTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTCGAAGG
TTCACACGTTGCGCTGTTCCTTCACCAAATTCGAAGGTTCTCACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCA
AATTCGAAGGTTCTACTTTGA

mRNA sequence

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Protein sequence

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MVEPKTDKAQAQVVRPESHQGPSSENSINRRVLLHFKGSEILDSSEILHSHKDKSSEFQSSQAEPENSERLHQGAYTNDKFLVKYKPLFEPDSDVVTVMMTETRTMEERM
AEMQEHINSLMKAIEEKDSQIVQLKSQIENQHIAESSQTQEKENFATSYYVDVEEVDNSKKGEQRISVFDRIKPPTTRPSVFQRMSMAATEEEHQCSVSTSTRPSAFQRL
GVSTSKKNQFSTSVFDCLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFSVLINTEGSLKFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFSKFEGSQ
LYDCYVVPPPSAKDLMLCVAALFPLLSSSKFLTRCVADPSPKVRRFTHFAAVHSLKFEGSHAASLQFILSKFEDSHALRCSPFSSSSKVHTLRCSFTKFEGSHVALLPSP
SSKVPTLCCCAASFSKFEGSHVALLPSPSSKVLMLRCFAVPSPSSKILMRFVAVPSLQVRRFTRCAASSPSSKVHTLRCSFTKFEGSHATLLPSPRSKVLVLRCFAYLSP
NSKVLL

Spg000179 (gene) of Sponge gourd (cylindrica) v1 genome