; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000189 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000189
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold6:24057992..24068417
RNA-Seq ExpressionSpg000189
SyntenySpg000189
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0638.85Show/hide
Query:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------
        A PT AES G N S    L+ +S + +   RLF KPS VRA   VCW EG    +  DDV WLHA+F+AK  GGP GG     +T  SH + Y       
Subjt:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------

Query:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
               +P    E+ R E+ +  + E +  + RLKK+G
Subjt:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]4.2e-0751.35Show/hide
Query:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG
        PT AES F  ++S +L         + LF KPS VRA   VCW EG    +  DDV WLH +FRAK+AGGPGGG
Subjt:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0638.85Show/hide
Query:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------
        A PT AES G N S    L+ +S + +   RLF KPS VRA   VCW EG    +  DDV WLHA+F+AK  GGP GG     +T  SH + Y       
Subjt:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------

Query:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
               +P    E+ R E+ +  + E +  + RLKK+G
Subjt:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.6e-0645.95Show/hide
Query:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG
        PT AES  + S++   F          LF KPS VR   R+CW       + E+DV WLHA+FRAK+AGG GGG
Subjt:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]1.1e-0745.74Show/hide
Query:  LFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQYFPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
        LF KPS VRA   VCW EG    +  DDV WLHA+ RAK+AGGPGGG +  R +     +Q       E  R ER +  + E + G+ RLKK+G
Subjt:  LFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQYFPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein7.8e-0738.85Show/hide
Query:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------
        A PT AES G N S    L+ +S + +   RLF KPS VRA   VCW EG    +  DDV WLHA+F+AK  GGP GG     +T  SH + Y       
Subjt:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------

Query:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
               +P    E+ R E+ +  + E +  + RLKK+G
Subjt:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

A0A5A7VIY9 Uncharacterized protein2.0e-0751.35Show/hide
Query:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG
        PT AES F  ++S +L         + LF KPS VRA   VCW EG    +  DDV WLH +FRAK+AGGPGGG
Subjt:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG

A0A5D3C867 DNA/RNA polymerases superfamily protein7.8e-0738.85Show/hide
Query:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------
        A PT AES G N S    L+ +S + +   RLF KPS VRA   VCW EG    +  DDV WLHA+F+AK  GGP GG     +T  SH + Y       
Subjt:  AKPTIAES-GFNLSNSGFLFGLS-YTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQY-------

Query:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
               +P    E+ R E+ +  + E +  + RLKK+G
Subjt:  -------FPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

A0A5D3CAC6 Uncharacterized protein7.8e-0745.95Show/hide
Query:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG
        PT AES  + S++   F          LF KPS VR   R+CW       + E+DV WLHA+FRAK+AGG GGG
Subjt:  PTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGG

A0A5D3CJL4 Retrotrans_gag domain-containing protein5.4e-0845.74Show/hide
Query:  LFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQYFPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG
        LF KPS VRA   VCW EG    +  DDV WLHA+ RAK+AGGPGGG +  R +     +Q       E  R ER +  + E + G+ RLKK+G
Subjt:  LFSKPSYVRATRRVCWMEGQRASLEEDDVRWLHAIFRAKLAGGPGGGKVHHRLTHSSHISQYFPPKISEHLR-ERVKEEEEEDLRGL-RLKKIG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAGGGTCGAATGCCGAGCTTCGTAGAGAAGTGTCGAGGCCTTGGGTATAAATGGTCAGGAGTTTTGCGGAGCGTGACGCGGAAATCACGTGTGAGTGTGCGGGC
ATGGCGCGAAAACCATGTGGGGAACCACAGCTGCACTCTTCCCACTGCAGATATATTTCTGTGTCCATGGATACTGACCATCAACAGCAAGTTAGCCCTTCACGTGTGTT
CATCGAAGCTCAGATCCTCATCAAATCCAGCTGTAGAACTGAAGAACAAGGCTCTGATCATCTTCGAATCCCGACACAGAACTGAAGAACGAAGTTTAGATCCTCTTCAA
AACCCACTGCAGAATCGAAGATCGAAGCTCAGATCCTCGTCAAATTCAGCTACAGAACTGAAGAACAAGGCTCCGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGA
AGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTTCAACCTGTCAAACTCTGGTTTTTTATTCGGTTTGAGCT
ACACACAAGGAACTAAGAGGTTATTTTCCAAGCCAAGTTATGTCAGGGCGACACGTCGTGTATGTTGGATGGAGGGTCAACGGGCATCGTTAGAGGAGGATGATGTCCGT
TGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAAT
TTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTACGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATTTG
GGTTCAACCTGTCAACCTCTAGTTTTTTATTCGATTTGGGCTACACAAAAGGAACTAAGAGGTTCAATGTTTCAGGAGGGTCAACGGGCATCGTTAGAGGAGGACGATGT
CGTTGGCTTCACGCCATCTTCTGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCAAATCTCAGATCCTCTCCAAATCCTATTGCAGAATTGAAGAACGAGGC
TCCGATCATCTTCCAATCTCACTGCAGAACTGAAGATCGAAGTTCAGATCCTCTTCAAGTCCACATGCCAAATCGAAGACTGAAGCTCAAAACCTCTTGTAGACCTGAAG
ACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAGGGTCGAATGCCGAGCTTCGTAGAGAAGTGTCGAGGCCTTGGGTATAAATGGTCAGGAGTTTTGCGGAGCGTGACGCGGAAATCACGTGTGAGTGTGCGGGC
ATGGCGCGAAAACCATGTGGGGAACCACAGCTGCACTCTTCCCACTGCAGATATATTTCTGTGTCCATGGATACTGACCATCAACAGCAAGTTAGCCCTTCACGTGTGTT
CATCGAAGCTCAGATCCTCATCAAATCCAGCTGTAGAACTGAAGAACAAGGCTCTGATCATCTTCGAATCCCGACACAGAACTGAAGAACGAAGTTTAGATCCTCTTCAA
AACCCACTGCAGAATCGAAGATCGAAGCTCAGATCCTCGTCAAATTCAGCTACAGAACTGAAGAACAAGGCTCCGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGA
AGATTTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTTCAACCTGTCAAACTCTGGTTTTTTATTCGGTTTGAGCT
ACACACAAGGAACTAAGAGGTTATTTTCCAAGCCAAGTTATGTCAGGGCGACACGTCGTGTATGTTGGATGGAGGGTCAACGGGCATCGTTAGAGGAGGATGATGTCCGT
TGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAAT
TTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTACGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATTTG
GGTTCAACCTGTCAACCTCTAGTTTTTTATTCGATTTGGGCTACACAAAAGGAACTAAGAGGTTCAATGTTTCAGGAGGGTCAACGGGCATCGTTAGAGGAGGACGATGT
CGTTGGCTTCACGCCATCTTCTGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCAAATCTCAGATCCTCTCCAAATCCTATTGCAGAATTGAAGAACGAGGC
TCCGATCATCTTCCAATCTCACTGCAGAACTGAAGATCGAAGTTCAGATCCTCTTCAAGTCCACATGCCAAATCGAAGACTGAAGCTCAAAACCTCTTGTAGACCTGAAG
ACTGA
Protein sequenceShow/hide protein sequence
MVKGRMPSFVEKCRGLGYKWSGVLRSVTRKSRVSVRAWRENHVGNHSCTLPTADIFLCPWILTINSKLALHVCSSKLRSSSNPAVELKNKALIIFESRHRTEERSLDPLQ
NPLQNRRSKLRSSSNSATELKNKAPHLRERVKEEEEEDFRGLRLKKIGKAHAKPTIAESGFNLSNSGFLFGLSYTQGTKRLFSKPSYVRATRRVCWMEGQRASLEEDDVR
WLHAIFRAKLAGGPGGGKVHHRLTHSSHISQYFPPKISEHLRERVKEEEEEDLRGLRLKKIGKAHAKPTIAEFGFNLSTSSFLFDLGYTKGTKRFNVSGGSTGIVRGGRC
RWLHAIFWAKLAGGPGGGVTSNLRSSPNPIAELKNEAPIIFQSHCRTEDRSSDPLQVHMPNRRLKLKTSCRPED