; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000193 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000193
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:23834711..23836006
RNA-Seq ExpressionSpg000193
SyntenySpg000193
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]3.6e-1078.57Show/hide
Query:  VHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS
        V+TGY+ LLTL+VLRDNDAI+SA R PLRQR+WECWA PTTS
Subjt:  VHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS

KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-1062.32Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM
        QVESEA L  VGK+I +PTTFMK LPRGNR SLQTREL KT   +          L TLSVLRDNDA++
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-1059.09Show/hide
Query:  LPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS
        +PRGNR SLQT E+ KT             PL TLSVL DNDA++SA + PLRQRRWEC  GPTTS
Subjt:  LPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.4e-1461.45Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWEC
        QVESEAL  MVGK+I +PTT MK LPRGNR SLQT EL KT              L TLSVL DND ++SA R  LRQRRWEC
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWEC

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-1062.32Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM
        QVESEA L  VGK+I +PTTFMK LPRGNR SLQTREL KT   +          L TLSVLRDNDA++
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM

TrEMBL top hitse value%identityAlignment
A0A5A7SUV2 Uncharacterized protein1.7e-1078.57Show/hide
Query:  VHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS
        V+TGY+ LLTL+VLRDNDAI+SA R PLRQR+WECWA PTTS
Subjt:  VHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS

A0A5A7T223 Reverse transcriptase1.7e-1062.32Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM
        QVESEA L  VGK+I +PTTFMK LPRGNR SLQTREL KT   +          L TLSVLRDNDA++
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM

A0A5A7TPS6 Retrotrans_gag domain-containing protein6.8e-1561.45Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWEC
        QVESEAL  MVGK+I +PTT MK LPRGNR SLQT EL KT              L TLSVL DND ++SA R  LRQRRWEC
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWEC

A0A5D3BTP3 Reverse transcriptase2.9e-1059.09Show/hide
Query:  LPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS
        +PRGNR SLQT E+ KT             PL TLSVL DNDA++SA + PLRQRRWEC  GPTTS
Subjt:  LPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQRRWECWAGPTTS

A0A5D3BV68 Reverse transcriptase1.7e-1062.32Show/hide
Query:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM
        QVESEA L  VGK+I +PTTFMK LPRGNR SLQTREL KT   +          L TLSVLRDNDA++
Subjt:  QVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAACACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTATGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTGCAAATGGTTGGAAAGATTATTCCATTTCCTACAACTTTCATGAAGAATTTGCCAAGAGGAAATAGGTCGAGTCTACAGACAAGGGAACTAGCTAAGACACCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCATGAGTGCTAGGCGGACCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAACACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTATGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGC
TCTATTGCAAATGGTTGGAAAGATTATTCCATTTCCTACAACTTTCATGAAGAATTTGCCAAGAGGAAATAGGTCGAGTCTACAGACAAGGGAACTAGCTAAGACACCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCATGAGTGCTAGGCGGACCCCACTACGACAAAGA
CGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAG
Protein sequenceShow/hide protein sequence
MVFGMENRTQDFRAKQEDLWFPMVFRAFWVVQVESEALLQMVGKIIPFPTTFMKNLPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAIMSARRTPLRQR
RWECWAGPTTS