; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000237 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000237
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold8:36392680..36393190
RNA-Seq ExpressionSpg000237
SyntenySpg000237
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032265.1 MuDRA-like transposase [Cucumis melo var. makuwa]5.5e-1333.33Show/hide
Query:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSCAY--------------------------ETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK
        V PV+ +++QV+DG  ++ V L   SCSC +                            YY   VL     G++ P+GN   WS+ E   +  + PP  +
Subjt:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSCAY--------------------------ETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK

Query:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF
        R  GRP+K RIPS+ E  K +KC RC R+ HN ++C+F
Subjt:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF

KAA0051992.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]1.0e-1949.52Show/hide
Query:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCG
        M+V  V N++YQVI+G + Y ++LP++S  S  Y           +I+PLG+   W IP+D  SI + PPNVKR+VGRPKK +I S +EF++RVKCGRCG
Subjt:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCG

Query:  RIDHN
        R+ HN
Subjt:  RIDHN

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]7.2e-1351.19Show/hide
Query:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRI
        M V  V N  YQVID     + HLP++   S  Y   Y      G IHPLG++++W+IPED K IK+ PPNVKR  GRPKKLRI
Subjt:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRI

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]1.5e-2359.38Show/hide
Query:  YDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKFFLTQ
        Y  HLP +   S  Y   Y      G IHPLG++++W+IPED K IK+  PNVKR  GRPKKLRIPS +EF+KRVKC RCGR  HN KSCKF LTQ
Subjt:  YDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKFFLTQ

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]2.7e-1235.25Show/hide
Query:  QVLPVTNMQYQVIDGKNHYDVHLPSRSCSCA--------------------------YETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNV
        +V P+ N +Y+VIDG NH+ V+L  +SCSC                              YY    L+    G ++P+GN + W   +    + V PP V
Subjt:  QVLPVTNMQYQVIDGKNHYDVHLPSRSCSCA--------------------------YETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNV

Query:  KRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF
        KR VGRP+K RI S+ E ++  KC RC R  HN ++CKF
Subjt:  KRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF

TrEMBL top hitse value%identityAlignment
A0A5A7SST5 MuDRA-like transposase2.7e-1333.33Show/hide
Query:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSCAY--------------------------ETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK
        V PV+ +++QV+DG  ++ V L   SCSC +                            YY   VL     G++ P+GN   WS+ E   +  + PP  +
Subjt:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSCAY--------------------------ETYYEYLVLI----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK

Query:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF
        R  GRP+K RIPS+ E  K +KC RC R+ HN ++C+F
Subjt:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF

A0A5D3BVP4 SWIM-type domain-containing protein2.3e-1232.61Show/hide
Query:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSC-------------------------AYETYYEYLVLI-----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK
        V PV+ +++QV+DG  ++ V L   SCSC                         A+ + Y Y  ++     G++ P+GN   WS+ E   +  + PP  +
Subjt:  VLPVTNMQYQVIDGKNHYDVHLPSRSCSC-------------------------AYETYYEYLVLI-----GIIHPLGNEAAWSIPEDAKSIKVFPPNVK

Query:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF
        R  GRP+K RIPS+ E  K  KC RC R  HN ++C+F
Subjt:  RSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF

A0A5D3C2C0 Protein FAR1-RELATED SEQUENCE 3-like5.0e-2049.52Show/hide
Query:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCG
        M+V  V N++YQVI+G + Y ++LP++S  S  Y           +I+PLG+   W IP+D  SI + PPNVKR+VGRPKK +I S +EF++RVKCGRCG
Subjt:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCG

Query:  RIDHN
        R+ HN
Subjt:  RIDHN

A0A6J1C328 uncharacterized protein LOC1110069943.5e-1351.19Show/hide
Query:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRI
        M V  V N  YQVID     + HLP++   S  Y   Y      G IHPLG++++W+IPED K IK+ PPNVKR  GRPKKLRI
Subjt:  MQVLPVTNMQYQVIDGKNHYDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRI

A0A6J1DNQ8 uncharacterized protein LOC1110223477.5e-2459.38Show/hide
Query:  YDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKFFLTQ
        Y  HLP +   S  Y   Y      G IHPLG++++W+IPED K IK+  PNVKR  GRPKKLRIPS +EF+KRVKC RCGR  HN KSCKF LTQ
Subjt:  YDVHLPSRS-CSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKFFLTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTCTTCCAGTGACAAATATGCAGTACCAGGTGATTGATGGGAAAAACCATTATGATGTTCATCTGCCTTCTCGATCATGCAGTTGTGCATATGAGACATATTA
CGAATACCTTGTGCTCATTGGCATAATTCATCCATTAGGCAACGAAGCAGCTTGGAGCATTCCAGAAGATGCCAAGAGCATAAAGGTTTTTCCCCCAAACGTGAAACGTT
CTGTTGGTAGGCCGAAAAAGTTACGAATCCCTTCGGTCATGGAATTCAGGAAGCGAGTCAAATGTGGACGATGTGGAAGAATTGATCACAATTGGAAATCTTGCAAATTT
TTTCTTACACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTCTTCCAGTGACAAATATGCAGTACCAGGTGATTGATGGGAAAAACCATTATGATGTTCATCTGCCTTCTCGATCATGCAGTTGTGCATATGAGACATATTA
CGAATACCTTGTGCTCATTGGCATAATTCATCCATTAGGCAACGAAGCAGCTTGGAGCATTCCAGAAGATGCCAAGAGCATAAAGGTTTTTCCCCCAAACGTGAAACGTT
CTGTTGGTAGGCCGAAAAAGTTACGAATCCCTTCGGTCATGGAATTCAGGAAGCGAGTCAAATGTGGACGATGTGGAAGAATTGATCACAATTGGAAATCTTGCAAATTT
TTTCTTACACAGTGA
Protein sequenceShow/hide protein sequence
MQVLPVTNMQYQVIDGKNHYDVHLPSRSCSCAYETYYEYLVLIGIIHPLGNEAAWSIPEDAKSIKVFPPNVKRSVGRPKKLRIPSVMEFRKRVKCGRCGRIDHNWKSCKF
FLTQ