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Spg000259 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000259
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationscaffold8:39979996..39980406
RNA-Seq ExpressionSpg000259
SyntenySpg000259
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX98953.1 Mitochondrial transcription termination factor family protein [Theobroma cacao]2.5e-4470.31Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++++SQ+G+SI+WFFR KGFD+KSI+EMF KCKRL+G  KE ASE WAYLK+IGIQERKL  +VS+ PKILT+ L  KLVPMVECLATLG+  HEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I++FP+++ HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

KAF3951193.1 hypothetical protein CMV_023131 [Castanea mollissima]7.7e-4672.66Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++ +SQHG+SI+WFFR +GFD+KSI+EMF KCKRLEG  +E ASE WAYLK+IGIQERKL  +VSK PKILT+ L  KLVPMVECL+TLG+ PHEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I KFP++L HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

XP_007043122.2 PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial [Theobroma cacao]2.5e-4470.31Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++++SQ+G+SI+WFFR KGFD+KSI+EMF KCKRL+G  KE ASE WAYLK+IGIQERKL  +VS+ PKILT+ L  KLVPMVECLATLG+  HEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I++FP+++ HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

XP_023890765.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Quercus suber]1.3e-4572.66Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++ +SQHG+SI+WFFR +GFD+KSI EMF KCKRLEG  +E ASE WAYLK+IGIQERKL  +VSK PKILT+ L  KLVPMVECL+TLG+ PHEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I KFP++L HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

XP_030943774.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Quercus lobata]1.3e-4572.66Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++ +SQHG+SI+WFFR +GFD+KSI EMF KCKRLEG  +E ASE WAYLK+IGIQERKL  +VSK PKILT+ L  KLVPMVECL+TLG+ PHEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I KFP++L HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

TrEMBL top hitse value%identityAlignment
A0A061E9I9 Mitochondrial transcription termination factor family protein1.2e-4470.31Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++++SQ+G+SI+WFFR KGFD+KSI+EMF KCKRL+G  KE ASE WAYLK+IGIQERKL  +VS+ PKILT+ L  KLVPMVECLATLG+  HEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I++FP+++ HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

A0A2N9F246 Uncharacterized protein9.2e-4570.31Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++ +SQHG+SI+WFF+ +GFD+KSIHEMF KCKRLEG  +E ASE WAYLK+IGI ERKL  +VSK PKILT+ L  KLVPMVECL+TL + P+EVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I KFP++L HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

A0A2P2KU61 Uncharacterized protein LOC105137001 isoform X11.0e-4369.53Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++S+ Q G+SILWFF+ KGFD+K+I EMF KCKRLEG  ++ ASE WAYL NIGI+ERKL  +VSK PKILT+ L  KL+PMVECL TLG+N HE+ASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I+KFP++L HS+EEKLCPLLAFFQAL I
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

A0A6J1BSC3 transcription termination factor MTERF6, chloroplastic/mitochondrial3.5e-4469.53Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++++SQ+G+SI+WFFR KGFD+KSI+EMF KCKRL+G  KE ASE WAYLK+IGIQERKL  +VS+ PKILT+ L  KLVPMVECLATLG+  HEVA A
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I++FP+++ HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

A0A7N2N0V2 Uncharacterized protein6.4e-4672.66Show/hide
Query:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA
        M++ +SQHG+SI+WFFR +GFD+KSI EMF KCKRLEG  +E ASE WAYLK+IGIQERKL  +VSK PKILT+ L  KLVPMVECL+TLG+ PHEVASA
Subjt:  MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASA

Query:  ISKFPYVLFHSMEEKLCPLLAFFQALDI
        I KFP++L HS+EEKLCPLLAFFQAL +
Subjt:  ISKFPYVLFHSMEEKLCPLLAFFQALDI

SwissProt top hitse value%identityAlignment
B6TGN4 Transcription termination factor MTERF4, chloroplastic2.6e-0427.59Show/hide
Query:  YLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDIYLRSSLGR
        +L+ IG+Q   +  ++ K P +L   L+ K+ P +E L  +G     +AS + ++P VL   + +KL    + F++  +  R   GR
Subjt:  YLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDIYLRSSLGR

Q6AUK6 Transcription termination factor MTERF4, chloroplastic2.6e-0433.33Show/hide
Query:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCP
        +LEGT     S   AYL  IG+  R++  +++++P++L + +   + P VE L  +G     +A  I K PYVL   +E+K+ P
Subjt:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCP

Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial4.7e-3865Show/hide
Query:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL
        +SI+WFFR KGFD+ SI +M  KCK+LE    ++ASE W YL NI GIQERKL ++VS+ PKILT+ L  +L+PMVECL++LG NP EVASAI+KFP +L
Subjt:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL

Query:  FHSMEEKLCPLLAFFQALDI
         HS+EEKLCPLLAFFQAL +
Subjt:  FHSMEEKLCPLLAFFQALDI

Q9ZT96 Transcription termination factor MTERF4, chloroplastic9.9e-0429.79Show/hide
Query:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDI
        +LEGT     S   AYL  IG+  R++  ++++YP+IL + +   + P+VE L  LG      A  I K P++L   +++ + P +   Q  ++
Subjt:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDI

Arabidopsis top hitse value%identityAlignment
AT1G78930.1 Mitochondrial transcription termination factor family protein9.2e-0521.49Show/hide
Query:  LSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEG-THKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAI
        L   Q    ++ F    GF ++ + ++  +C  + G + ++   +   +L   G+       ++ KYP+ L       ++P ++ L  +G +  E+A  I
Subjt:  LSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEG-THKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAI

Query:  SKFPYVLFHSMEEKLCPLLAF
         KF  +L +S+++ L P   F
Subjt:  SKFPYVLFHSMEEKLCPLLAF

AT4G02990.1 Mitochondrial transcription termination factor family protein7.0e-0529.79Show/hide
Query:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDI
        +LEGT     S   AYL  IG+  R++  ++++YP+IL + +   + P+VE L  LG      A  I K P++L   +++ + P +   Q  ++
Subjt:  RLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFHSMEEKLCPLLAFFQALDI

AT4G38160.1 Mitochondrial transcription termination factor family protein3.3e-3965Show/hide
Query:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL
        +SI+WFFR KGFD+ SI +M  KCK+LE    ++ASE W YL NI GIQERKL ++VS+ PKILT+ L  +L+PMVECL++LG NP EVASAI+KFP +L
Subjt:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL

Query:  FHSMEEKLCPLLAFFQALDI
         HS+EEKLCPLLAFFQAL +
Subjt:  FHSMEEKLCPLLAFFQALDI

AT4G38160.2 Mitochondrial transcription termination factor family protein3.3e-3965Show/hide
Query:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL
        +SI+WFFR KGFD+ SI +M  KCK+LE    ++ASE W YL NI GIQERKL ++VS+ PKILT+ L  +L+PMVECL++LG NP EVASAI+KFP +L
Subjt:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL

Query:  FHSMEEKLCPLLAFFQALDI
         HS+EEKLCPLLAFFQAL +
Subjt:  FHSMEEKLCPLLAFFQALDI

AT4G38160.3 Mitochondrial transcription termination factor family protein3.3e-3965Show/hide
Query:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL
        +SI+WFFR KGFD+ SI +M  KCK+LE    ++ASE W YL NI GIQERKL ++VS+ PKILT+ L  +L+PMVECL++LG NP EVASAI+KFP +L
Subjt:  TSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNI-GIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVL

Query:  FHSMEEKLCPLLAFFQALDI
         HS+EEKLCPLLAFFQAL +
Subjt:  FHSMEEKLCPLLAFFQALDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAGCGCCAGCCAACACGGTACCAGTATCTTGTGGTTCTTCAGGAGTAAAGGGTTCGACGAAAAAAGCATCCACGAAATGTTCACAAAGTGCAAACGGCTCGA
AGGTACGCATAAAGAAATCGCCTCTGAATGTTGGGCTTACTTGAAAAATATTGGAATTCAAGAGCGGAAGCTTCTTCACATGGTTTCCAAGTACCCCAAAATTCTTACCA
TTTGTCTGAAGGGGAAGCTTGTTCCCATGGTCGAGTGCCTTGCAACTCTGGGAAGTAATCCCCATGAAGTTGCTTCGGCCATTTCCAAATTTCCTTACGTGCTTTTTCAT
AGCATGGAAGAGAAGCTGTGTCCTCTTTTGGCTTTCTTTCAGGCATTGGATATATACCTGAGAAGCAGCTTGGGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAGCGCCAGCCAACACGGTACCAGTATCTTGTGGTTCTTCAGGAGTAAAGGGTTCGACGAAAAAAGCATCCACGAAATGTTCACAAAGTGCAAACGGCTCGA
AGGTACGCATAAAGAAATCGCCTCTGAATGTTGGGCTTACTTGAAAAATATTGGAATTCAAGAGCGGAAGCTTCTTCACATGGTTTCCAAGTACCCCAAAATTCTTACCA
TTTGTCTGAAGGGGAAGCTTGTTCCCATGGTCGAGTGCCTTGCAACTCTGGGAAGTAATCCCCATGAAGTTGCTTCGGCCATTTCCAAATTTCCTTACGTGCTTTTTCAT
AGCATGGAAGAGAAGCTGTGTCCTCTTTTGGCTTTCTTTCAGGCATTGGATATATACCTGAGAAGCAGCTTGGGAAGATGA
Protein sequenceShow/hide protein sequence
MDLSASQHGTSILWFFRSKGFDEKSIHEMFTKCKRLEGTHKEIASECWAYLKNIGIQERKLLHMVSKYPKILTICLKGKLVPMVECLATLGSNPHEVASAISKFPYVLFH
SMEEKLCPLLAFFQALDIYLRSSLGR