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Spg000280 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000280
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionexpressed protein localized to the inner membrane of the chloroplast.
Genome locationscaffold8:35876448..35879945
RNA-Seq ExpressionSpg000280
SyntenySpg000280
Gene Ontology termsGO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010970.1 hypothetical protein SDJN02_27768, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-4774.48Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+KC RTN+KLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TP+VPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_022944447.1 uncharacterized protein LOC111448897 [Cucurbita moschata]2.6e-4774.48Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+KC RT++KLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_022986629.1 uncharacterized protein LOC111484314 [Cucurbita maxima]8.9e-4875.17Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+KC R+N+KLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_023512433.1 uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]8.9e-4875.17Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQ PKLAIQ+KC RTN+KLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_038902580.1 uncharacterized protein LOC120089235 [Benincasa hispida]2.3e-4877.24Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+K  RTN KLSVRAEYNDG RSGGGDFVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

TrEMBL top hitse value%identityAlignment
A0A1S3C9M4 uncharacterized protein LOC1034983951.6e-4775.34Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKSVSFGQ PKLAI++KC +TN+KLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM
        KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV EA+PEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM

A0A5D3CQ66 Uncharacterized protein1.6e-4775.34Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKSVSFGQ PKLAI++KC +TN+KLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM
        KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV EA+PEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM

A0A6J1D647 uncharacterized protein LOC1110172731.3e-4776.55Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS++FGQAPKLAIQKKCLRTN KLSVRAEYND GR GGGDFVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLNAKI QLNSAIDNVSSRLRGGNNTPAVPVEADPE EATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

A0A6J1FVP6 uncharacterized protein LOC1114488971.3e-4774.48Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+KC RT++KLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

A0A6J1JGK4 uncharacterized protein LOC1114843144.3e-4875.17Show/hide
Query:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------
        GGLIKASDLSSKS+SFGQAPKLAIQ+KC R+N+KLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQ                           
Subjt:  GGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQ---------------------------

Query:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        KTRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  KTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast.2.1e-1036.3Show/hide
Query:  SVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ-----------------------------KTRQTLNAK
        SVSFG      +     RT   L++++ Y D   SG  G FV GF+LGG + G L  ++APQ                             KTR+ L  K
Subjt:  SVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ-----------------------------KTRQTLNAK

Query:  ISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT
        I+QLNSAID+VSS+L+   +TP     +  EIEAT
Subjt:  ISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT

AT3G02900.1 unknown protein3.2e-1948.09Show/hide
Query:  LAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ---------------------------KTRQTLNAKISQLNSAIDNV
        L +Q K  R ++KLSV A Y  G + GG  DFV GFLLG AVFGTLAYIFAPQ                           + R+ LN KI QLNSAID V
Subjt:  LAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ---------------------------KTRQTLNAKISQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEIEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEIEAT

AT3G02900.2 unknown protein3.2e-1948.09Show/hide
Query:  LAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ---------------------------KTRQTLNAKISQLNSAIDNV
        L +Q K  R ++KLSV A Y  G + GG  DFV GFLLG AVFGTLAYIFAPQ                           + R+ LN KI QLNSAID V
Subjt:  LAIQKKCLRTNNKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQ---------------------------KTRQTLNAKISQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEIEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEIEAT

AT5G16660.1 unknown protein2.3e-2550.64Show/hide
Query:  TGIGVGGLIKASDLS--SKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQ-------------------
        +G+     +KA+ LS  +K  S  +   L I KK  RT  K SV A Y DG RSG  GDF+AGFLLGGAVFG +AYIFAPQ                   
Subjt:  TGIGVGGLIKASDLS--SKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQ-------------------

Query:  ---------KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT
                 KTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Subjt:  ---------KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT

AT5G16660.2 unknown protein3.6e-2350Show/hide
Query:  TGIGVGGLIKASDLS--SKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQ-------------------
        +G+     +KA+ LS  +K  S  +   L I KK  RT  K SV A   DG RSG  GDF+AGFLLGGAVFG +AYIFAPQ                   
Subjt:  TGIGVGGLIKASDLS--SKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQ-------------------

Query:  ---------KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT
                 KTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Subjt:  ---------KTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAAAATTTTCTTGCAAACCTCTTGAGAAAATTATGGTCTCGTCGATTTTGTTATGTGAATTTCTGGACGGGAATTGGAGTTGGAGGGTTGATCAAGGCCTCAGA
TCTCTCCTCAAAGTCCGTTTCCTTTGGGCAAGCACCAAAACTCGCCATTCAGAAGAAGTGCTTGAGAACCAACAACAAGTTATCAGTCCGTGCTGAGTACAATGATGGTG
GTAGAAGTGGAGGTGGGGATTTTGTTGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACTTTAGCTTACATTTTCGCTCCACAGAAAACCAGACAGACGTTGAATGCA
AAAATAAGCCAGTTGAATTCCGCCATCGACAATGTATCTTCACGTTTGAGAGGTGGCAACAACACTCCAGCTGTGCCAGTTGAAGCAGATCCTGAGATAGAAGCTACCAT
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACGAAAATTTTCTTGCAAACCTCTTGAGAAAATTATGGTCTCGTCGATTTTGTTATGTGAATTTCTGGACGGGAATTGGAGTTGGAGGGTTGATCAAGGCCTCAGA
TCTCTCCTCAAAGTCCGTTTCCTTTGGGCAAGCACCAAAACTCGCCATTCAGAAGAAGTGCTTGAGAACCAACAACAAGTTATCAGTCCGTGCTGAGTACAATGATGGTG
GTAGAAGTGGAGGTGGGGATTTTGTTGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACTTTAGCTTACATTTTCGCTCCACAGAAAACCAGACAGACGTTGAATGCA
AAAATAAGCCAGTTGAATTCCGCCATCGACAATGTATCTTCACGTTTGAGAGGTGGCAACAACACTCCAGCTGTGCCAGTTGAAGCAGATCCTGAGATAGAAGCTACCAT
GTAA
Protein sequenceShow/hide protein sequence
MNENFLANLLRKLWSRRFCYVNFWTGIGVGGLIKASDLSSKSVSFGQAPKLAIQKKCLRTNNKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQKTRQTLNA
KISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM