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Spg000311 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000311
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein RADIALIS-like 2
Genome locationscaffold8:37320635..37321831
RNA-Seq ExpressionSpg000311
SyntenySpg000311
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3379Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSA---PGTSNGNNVDDQEQSQQF
        MAS+SSSH S SWTPKQNKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLVEDVKHIESG VPFPNY+S     GTSN  N++DQEQ   F
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSA---PGTSNGNNVDDQEQSQQF

KAG7035087.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-3381.25Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ
        MASISSSH S SW+P QNKAFERALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVEDVKHIESG VPFPNYT    SAP TS  +N++DQE+
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ

XP_022946976.1 transcription factor RADIALIS-like [Cucurbita moschata]6.0e-3381.25Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ
        MASISSSHDS SW+P QNKAFE ALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVEDVKHIESG VPFPNYT    SAP TS+ +N++ QEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]3.8e-3586.17Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT--SAPGTSNGNNVDDQEQ
        MASISSSHDS SW+P QNKAFERALAVFDKDTPDRWLNVAKAVG KTADEVKRHFELLVEDVKHIESG VPFPNYT  SAP TS+ +N++DQEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT--SAPGTSNGNNVDDQEQ

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]1.2e-3686.32Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNY--TSAPGTSNGNNVDDQEQ
        MASISSSHDSGSWTP QNKAFERALAVFDKDTPDRWLNVA AV GGKTADEVKRHF+LLVEDVKHIESGRVPFPNY  TS P TS+  N++DQEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNY--TSAPGTSNGNNVDDQEQ

TrEMBL top hitse value%identityAlignment
A0A6J1CYR5 protein RADIALIS-like 23.8e-3377.17Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        MA++SS   SGSWTP QNKAFERALAVFDKDTPDRW NVA AVGGKTADEVKRHF+LLVEDVKHIESGR+PFPNYT+    S+  NV+D+E+
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ

A0A6J1FXX9 protein RADIALIS-like 25.0e-3381.25Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ
        MAS++SSH S SWTPKQNKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLVEDVKHIESG VPFPNY+   SA GTSN  N++DQEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ

A0A6J1G543 transcription factor RADIALIS-like2.9e-3381.25Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ
        MASISSSHDS SW+P QNKAFE ALAVFDKDTPDRWLNVAKAVG KT DEVKRHFELLVEDVKHIESG VPFPNYT    SAP TS+ +N++ QEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYT----SAPGTSNGNNVDDQEQ

A0A6J1JBS7 protein RADIALIS-like 21.9e-3280.21Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ
        MAS+SSSH S SWTPK+NKAFERALAVFDKDTPDRWLNVAKAV GGKT DEVK HF+LLVEDVKHIE G VPFPNY+   SA GTSN  N++DQEQ
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAV-GGKTADEVKRHFELLVEDVKHIESGRVPFPNYT---SAPGTSNGNNVDDQEQ

A0A6J1L657 protein RADIALIS-like 12.5e-3283.53Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGN
        MASISSS DS SW+P QNKAFERALA+FDKDTPDRWLNVAKAVG KTADEVKRHFELLVEDVKHIESG VPFPNYTS+  +S+ +
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.0e-2762.37Show/hide
Query:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        MAS S SS  SGSWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVKRH+ELLV+D+  IE+G VPFPNY ++ G +NG    ++++
Subjt:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ

Q58FS3 Transcription factor RADIALIS1.1e-2460Show/hide
Query:  ISSSHDSG-SWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        ++S+  SG  W+ K+NKAFERALAV+DKDTPDRW NVA+AV G+T +EVK+H+E+LVED+K+IESG+VPFPNY     T+ GN   D+++
Subjt:  ISSSHDSG-SWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ

Q6NNN0 Protein RADIALIS-like 35.3e-2466.28Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNN
        MAS S S  S SWT K+NK FERALA +D+DTPDRW NVA+AVGGK+A+EV+RH+ELL+ DV  IESGR P PNY      SNGNN
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNN

Q8GW75 Protein RADIALIS-like 51.2e-2361.8Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD
        MAS SS   S SWT KQNK FERALAV+DKDTPDRW NVAKAVG K+A+EVKRH+++LVED+ +IE   VP P Y +    S    +DD
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD

Q9SIJ5 Protein RADIALIS-like 26.7e-2763.44Show/hide
Query:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        MAS S SS+ SGSWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E KR ++LLV D++ IE+G VPFP+Y +  G SN   + D+E+
Subjt:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 58.4e-2561.8Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD
        MAS SS   S SWT KQNK FERALAV+DKDTPDRW NVAKAVG K+A+EVKRH+++LVED+ +IE   VP P Y +    S    +DD
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD

AT1G75250.1 RAD-like 61.1e-2464.04Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD
        MAS S S  S  WT  QNK FERALAV+DKDTPDRW NVAKAVGGKT +EVKRH+++LVED+ +IE+GRVP PNY +    SN  +++D
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD

AT1G75250.2 RAD-like 61.1e-2464.04Show/hide
Query:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD
        MAS S S  S  WT  QNK FERALAV+DKDTPDRW NVAKAVGGKT +EVKRH+++LVED+ +IE+GRVP PNY +    SN  +++D
Subjt:  MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDD

AT2G21650.1 Homeodomain-like superfamily protein4.7e-2863.44Show/hide
Query:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        MAS S SS+ SGSWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E KR ++LLV D++ IE+G VPFP+Y +  G SN   + D+E+
Subjt:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ

AT4G39250.1 RAD-like 12.1e-2862.37Show/hide
Query:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ
        MAS S SS  SGSWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVKRH+ELLV+D+  IE+G VPFPNY ++ G +NG    ++++
Subjt:  MASIS-SSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTCCTCTCATGACTCTGGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCT
CAACGTCGCCAAGGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGAGCTTCTCGTCGAGGATGTCAAGCACATTGAATCCGGCCGCGTTCCCTTCCCTA
ATTATACCTCCGCCCCTGGAACCTCCAATGGCAATAATGTCGATGACCAAGAACAAAGTCAACAGTTTACGAGAACTCTGTGGCGTGCCACTCACGTGCCTTCTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATCTCCTCCTCTCATGACTCTGGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAGAGGGCCTTGGCTGTCTTTGACAAGGACACCCCCGATCGCTGGCT
CAACGTCGCCAAGGCCGTCGGCGGCAAGACCGCCGACGAAGTCAAGAGGCATTTCGAGCTTCTCGTCGAGGATGTCAAGCACATTGAATCCGGCCGCGTTCCCTTCCCTA
ATTATACCTCCGCCCCTGGAACCTCCAATGGCAATAATGTCGATGACCAAGAACAAAGTCAACAGTTTACGAGAACTCTGTGGCGTGCCACTCACGTGCCTTCTCCATAG
Protein sequenceShow/hide protein sequence
MASISSSHDSGSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGKTADEVKRHFELLVEDVKHIESGRVPFPNYTSAPGTSNGNNVDDQEQSQQFTRTLWRATHVPSP