; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000318 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000318
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:36840790..36843078
RNA-Seq ExpressionSpg000318
SyntenySpg000318
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL77781.1 hypothetical protein [Colocasia esculenta]9.2e-1841.73Show/hide
Query:  SSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCFFHRDHGHSTRNCIQLKDE
        S++++    DKK+ +D G       GR   D    L+ F  YTP ++  EQIL EIRN   L  P++++S+P  RD+++YC FHRDHGH T  C QLKDE
Subjt:  SSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCFFHRDHGHSTRNCIQLKDE

Query:  IEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ
        IE LI+ GYL  F  + E   R    T + P K++   Q
Subjt:  IEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQ

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.4e-1841.96Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E   KR           K++R+ +  QG     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.1e-2144.06Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR           K++R+ +  QG     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]2.2e-1942.95Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGR-PDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK
        +KYMSAEE    KK E E KR           K++R+ E         + R   Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGR-PDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK

Query:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         +YC FHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.9e-1841.96Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR           K++R+ +  QG     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.2e-1841.96Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E   KR           K++R+ +  QG     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FH DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DWY0 uncharacterized protein LOC1110252931.5e-2144.06Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR           K++R+ +  QG     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++   R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FHRDHGH+T++C  LK+E+E LIR GYLKE+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DYL6 uncharacterized protein LOC1110257859.0e-1941.96Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS
        ++YMSA E   SK+ E + KR           K++R+ +  QG     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K     R K 
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKS

Query:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
        +YC FHRDH H+T++   LK+E+E LIR GYL+E+  + +A Q
Subjt:  QYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

A0A6J1DZ52 uncharacterized protein LOC1110256121.1e-1942.95Show/hide
Query:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGR-PDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK
        +KYMSAEE    KK E E KR           K++R+ E         + R   Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+ P+ R K
Subjt:  EKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGR-PDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK

Query:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK
         +YC FHRDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++  K
Subjt:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGK

A0A7N2N013 Ribonuclease H2.9e-1742.36Show/hide
Query:  KYMSAEELLKSKKLEREHKRPSSSDR--DSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK
        KYM+AE+ L S++      RP   DR  DS +D+ ++    G  R D  R +P  G    +F  +TP + P +Q+LM+I++   L  P KLKS+P  R +
Subjt:  KYMSAEELLKSKKLEREHKRPSSSDR--DSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDK

Query:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ
         +YC FHRDHGH T +C  LK +IEALIR G L++F  K   DQ
Subjt:  SQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATGTGTTATAGGCAATTTTGGACAACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCTAGAGAAAGAGCCGACCCATA
TGATCGGCCTCGGCCCAAGGCCGAGGCCGACCTCTCGGTCCCTGATGCCTCTAGCCGCCTCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTA
GGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTCGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCA
CGTGAAGGTCAGGGGATGGAGAAGAGAATTCTAGACATAAACACAGAGAATTCGGATGGTGACTGCCACCAGCGGAGGTCACGGGAAGAGGGCCGAGATCGGCCTCAGAC
CGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCA
GGATACTTCGTATCTTGGATAAACCGGGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGACGAAGGGGAAGGAGCCCATGGAGCACACTGCAGAATCA
GAGACAATATCGAAGGGAAAGAAAACTAGCAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACTGATCGTACAATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGG
ACGTGACTACACAGTTTCTACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGTAGGAGTGCCAGAACTGCCGAATCCGAGGCCAGAG
CAGCCGAAGCTGAAGCCAGGGCTGCTGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAGGGCAGCCTCCCTTGGAAGACTAAG
CTTCTTAACGCACTAAAGGAGCTTGGAAATCCACAGGGAGACCTGCCTAAGTTGAAGGACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTT
CACAGAAGAAAAGTACATGAGCGCAGAGGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTTGGAAGGACAAGAAGC
AGCGAACCGACGAGGGTGGCCAAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAG
GAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTTTCTTTCATCGAGA
TCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGT
GGCCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATGTGTTATAGGCAATTTTGGACAACCCGACGCACAAGGAGCTGACGAGGACGTCCGGGCGAAAATAGGGCTGGGAGACCGACCTAGAGAAAGAGCCGACCCATA
TGATCGGCCTCGGCCCAAGGCCGAGGCCGACCTCTCGGTCCCTGATGCCTCTAGCCGCCTCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTA
GGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCTTTCGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCA
CGTGAAGGTCAGGGGATGGAGAAGAGAATTCTAGACATAAACACAGAGAATTCGGATGGTGACTGCCACCAGCGGAGGTCACGGGAAGAGGGCCGAGATCGGCCTCAGAC
CGAATCTCCTCGTCCTCGGTCTCCACTGCCCTCATCCCGAGAGAAGCAAGCTGATCTAAAATTTGCTGCTCTCGAAAACAAAGTAAGTGCGATGGATCATAATTTGTCCA
GGATACTTCGTATCTTGGATAAACCGGGTCCTAGCACTAAAACCCCTGATGAGAGGTTGGTTAGGGATCCGACGAAGGGGAAGGAGCCCATGGAGCACACTGCAGAATCA
GAGACAATATCGAAGGGAAAGAAAACTAGCAGCATGACCAGCAAGATCAGGGGGCTCAAACCTACTGATCGTACAATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGG
ACGTGACTACACAGTTTCTACCCCAAGCTATGGTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGTAGGAGTGCCAGAACTGCCGAATCCGAGGCCAGAG
CAGCCGAAGCTGAAGCCAGGGCTGCTGAGGCCGAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAAGGGCAGCCTCCCTTGGAAGACTAAG
CTTCTTAACGCACTAAAGGAGCTTGGAAATCCACAGGGAGACCTGCCTAAGTTGAAGGACTCAGGAGCACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTT
CACAGAAGAAAAGTACATGAGCGCAGAGGAGTTGCTCAAATCAAAGAAGTTAGAACGTGAACACAAGAGGCCTTCTTCATCTGACCGCGACAGTTGGAAGGACAAGAAGC
AGCGAACCGACGAGGGTGGCCAAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAGGTACACCCCTACTTCAATCCCACAG
GAGCAGATCTTGATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGTCAGTATTGTTTCTTTCATCGAGA
TCATGGACATTCAACCAGGAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGGCAGACCAGAGGT
GGCCGAGGCCGACCAGAGACGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCATTGA
Protein sequenceShow/hide protein sequence
MICVIGNFGQPDAQGADEDVRAKIGLGDRPRERADPYDRPRPKAEADLSVPDASSRLGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFSLSQATSSPSSTNLPLVA
REGQGMEKRILDINTENSDGDCHQRRSREEGRDRPQTESPRPRSPLPSSREKQADLKFAALENKVSAMDHNLSRILRILDKPGPSTKTPDERLVRDPTKGKEPMEHTAES
ETISKGKKTSSMTSKIRGLKPTDRTILRSPESSTLKGRDYTVSTPSYGHTKTDLRNLIEEKRRSARTAESEARAAEAEARAAEAEARAAEAEARLAEAEAKKGSLPWKTK
LLNALKELGNPQGDLPKLKDSGAQDLEELIDQVDPPFTEEKYMSAEELLKSKKLEREHKRPSSSDRDSWKDKKQRTDEGGQGRPDHGRGRPDQGDYLKKFERYTPTSIPQ
EQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCFFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDPGKDKGGPQLEIH