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Spg000344 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000344
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:34266539..34269222
RNA-Seq ExpressionSpg000344
SyntenySpg000344
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.3e-2948.89Show/hide
Query:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV
        V   P P+    QI  I        +  A+I TP E+LFEILL +GYVS+EY   +L  +G+D++LTC FHAGAKG++ EQC+ F   VQEL+DSK L V
Subjt:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV

Query:  TQAHHQEEEIDAVEELLPKE---SLNSSFKLKP--LTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI
          + HQ++ I+ VE++   E   +  SS  LKP  LTI+Y E     +   K ITI VPAPF+YKSSKAVPW YE KVT+
Subjt:  TQAHHQEEEIDAVEELLPKE---SLNSSFKLKP--LTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.2e-2850.34Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL
        A+I TP  +LFEILL +GY+S+EY       +G+D++LTC FH GAKG+S EQC+ F  +VQEL+DSK L    + H ++  + VE++L  E  + S K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        KPLTI+YRE     +   K   I VP PF+YKSSKAVPW YE KVT+
Subjt:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.1e-3248.54Show/hide
Query:  PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAH
        P P+ K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +D+NLTC +HAGA+G+  EQC  F ++VQEL+D K L VTQ+ 
Subjt:  PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAH

Query:  HQEEEIDAVEELLPKESLNSSFKLKPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        HQE+ ID VE +   ES ++++K KPLT+ YRE     ++  + ITIQVPAPF+Y SSKAVPW YE KVT+
Subjt:  HQEEEIDAVEELLPKESLNSSFKLKPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.1e-1151.65Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVSTTAETSMPQHTPYNPLYDIPVGQYPFP
        + K EQEKT++DIEE+REK+DAI+ ALEKGK +A+T+ P      PQ    F PSF           E  M Q+T YNPLYDIP GQ+P P
Subjt:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVSTTAETSMPQHTPYNPLYDIPVGQYPFP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.1e-3153.74Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL
        A+I TPKE+LFEILL +GYVS+EY   +L  + +D++LTC FHAGAKG+S EQC+ F  +VQEL+DSK L V  + HQ++ I+ VE++   E  + + K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        K LTI+Y E     +   K ITI VPAPF+YKSSKAVPW Y+ KVT+
Subjt:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]2.1e-1651.52Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVSTTAETSMPQHTPYNPLYDIPVGQYPFPSFKEGQIPQIP
        ++K EQEKT++DIEE+REK+D I   LEKGK  AD      PI  PQ   P+PP +   +   AE  MPQ+T YNPLYD+P+GQYP    K  Q  QIP
Subjt:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVSTTAETSMPQHTPYNPLYDIPVGQYPFPSFKEGQIPQIP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.1e-3148Show/hide
Query:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV
        V + P P+ +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +G+D++LTC FHAGAKG+S EQC+ F  +VQEL+DSK L V
Subjt:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV

Query:  TQAHHQEEEIDAVEELLPKESLNSSFKLKPLTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI
          + HQ++ I+ VE++   E  + + K K LTI+Y E     +   K ITI VPAPF+YKSSKAVPW Y+ KVT+
Subjt:  TQAHHQEEEIDAVEELLPKESLNSSFKLKPLTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H6.2e-3048.89Show/hide
Query:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV
        V   P P+    QI  I        +  A+I TP E+LFEILL +GYVS+EY   +L  +G+D++LTC FHAGAKG++ EQC+ F   VQEL+DSK L V
Subjt:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV

Query:  TQAHHQEEEIDAVEELLPKE---SLNSSFKLKP--LTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI
          + HQ++ I+ VE++   E   +  SS  LKP  LTI+Y E     +   K ITI VPAPF+YKSSKAVPW YE KVT+
Subjt:  TQAHHQEEEIDAVEELLPKE---SLNSSFKLKP--LTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI

A0A6J1D099 Ribonuclease H1.2e-2850.34Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL
        A+I TP  +LFEILL +GY+S+EY       +G+D++LTC FH GAKG+S EQC+ F  +VQEL+DSK L    + H ++  + VE++L  E  + S K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        KPLTI+YRE     +   K   I VP PF+YKSSKAVPW YE KVT+
Subjt:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.0e-3248.54Show/hide
Query:  PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAH
        P P+ K  QI  +        +  +EI TP + LFEIL  +GY+S+E+   D+  E +D+NLTC +HAGA+G+  EQC  F ++VQEL+D K L VTQ+ 
Subjt:  PFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAH

Query:  HQEEEIDAVEELLPKESLNSSFKLKPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        HQE+ ID VE +   ES ++++K KPLT+ YRE     ++  + ITIQVPAPF+Y SSKAVPW YE KVT+
Subjt:  HQEEEIDAVEELLPKESLNSSFKLKPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.0e-1151.65Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVSTTAETSMPQHTPYNPLYDIPVGQYPFP
        + K EQEKT++DIEE+REK+DAI+ ALEKGK +A+T+ P      PQ    F PSF           E  M Q+T YNPLYDIP GQ+P P
Subjt:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSF---ASHVSTTAETSMPQHTPYNPLYDIPVGQYPFP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222315.1e-3253.74Show/hide
Query:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL
        A+I TPKE+LFEILL +GYVS+EY   +L  + +D++LTC FHAGAKG+S EQC+ F  +VQEL+DSK L V  + HQ++ I+ VE++   E  + + K 
Subjt:  AEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKESLNSSFKL

Query:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI
        K LTI+Y E     +   K ITI VPAPF+YKSSKAVPW Y+ KVT+
Subjt:  KPLTIYYRE--TTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTI

A0A6J1DZ90 Ribonuclease H1.0e-1651.52Show/hide
Query:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVSTTAETSMPQHTPYNPLYDIPVGQYPFPSFKEGQIPQIP
        ++K EQEKT++DIEE+REK+D I   LEKGK  AD      PI  PQ   P+PP +   +   AE  MPQ+T YNPLYD+P+GQYP    K  Q  QIP
Subjt:  EEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVSTTAETSMPQHTPYNPLYDIPVGQYPFPSFKEGQIPQIP

A0A6J1DZ90 Ribonuclease H1.5e-3148Show/hide
Query:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV
        V + P P+ +  QI  I        +  A+I TP  +LFEILL +GYVS+EY   +L  +G+D++LTC FHAGAKG+S EQC+ F  +VQEL+DSK L V
Subjt:  VGQYPFPSFKEGQIPQI------PMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMV

Query:  TQAHHQEEEIDAVEELLPKESLNSSFKLKPLTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI
          + HQ++ I+ VE++   E  + + K K LTI+Y E     +   K ITI VPAPF+YKSSKAVPW Y+ KVT+
Subjt:  TQAHHQEEEIDAVEELLPKESLNSSFKLKPLTIYYRETTTTHD--PKSITIQVPAPFKYKSSKAVPWSYEYKVTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTTAAAAGTTATTCAAGCTCGTTGGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAACAATTGTCACTAGAGAGAGG
ACAACTAGAGGAAAAATACTCCTCATTAAGGGGAGATTATGTCATTATGAGAGAAGACATGCAAATAATTCTTGGGAAAGTAAATCAAACTATGAACACTATCAAGATCA
TGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGT
AGAGACCTTGGTAAAATAGCTCGTTCAACAAGAGTCTACCACGCGTACAACACTAGGCATAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGGGA
CATCGAGGAAATCAGAGAAAAGGTTGATGCAATCATTGCCGCTTTAGAGAAGGGCAAAATGGTGGCAGATACGACTGCACCAGACACTCCGATTGGAAACCCTCAAGCTG
GCCTACCATTTCCACCCAGTTTCGCTTCACATGTTAGTACGACAGCAGAAACGTCCATGCCACAACATACTCCCTATAACCCCTTATATGACATACCTGTTGGGCAATAC
CCTTTTCCATCATTTAAAGAAGGCCAAATCCCCCAAATACCCATGGCTAGCCAAGCTGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATA
TGTATCAATAGAGTATGCACACAAGGACCTTGTTCAAGAAGGATTCGATGATAATTTGACTTGCCTATTTCATGCTGGGGCAAAGGGGTATTCTTTCGAACAATGTCATC
ATTTTCATAAGAGGGTCCAAGAACTGGTGGACTCAAAATTTCTTATGGTCACCCAAGCCCATCACCAGGAGGAGGAAATAGACGCCGTGGAAGAATTGCTGCCTAAAGAA
AGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGACGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTA
CAAGAGTTCTAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTCAATCAGAAGAGTCTGAAGCTTTTAAAAGTTATTCAAGCTCGTTGGAACGTCAGCTCCAAGCATTTCAAAGGGCAAGCGAACAATTGTCACTAGAGAGAGG
ACAACTAGAGGAAAAATACTCCTCATTAAGGGGAGATTATGTCATTATGAGAGAAGACATGCAAATAATTCTTGGGAAAGTAAATCAAACTATGAACACTATCAAGATCA
TGGCTAGGAGAGCCCGAGGATTTGCAGAATGGGCAAGGGATCTGCGAGAGAATACATCACCTATGGCCTCTAATGTGGAGGAGTTGTTTGAGTTTTTAGGGATGATTCGT
AGAGACCTTGGTAAAATAGCTCGTTCAACAAGAGTCTACCACGCGTACAACACTAGGCATAGAACAAGGATTATGGAAGAAAAGGGTGAACAAGAGAAGACTAAGCGGGA
CATCGAGGAAATCAGAGAAAAGGTTGATGCAATCATTGCCGCTTTAGAGAAGGGCAAAATGGTGGCAGATACGACTGCACCAGACACTCCGATTGGAAACCCTCAAGCTG
GCCTACCATTTCCACCCAGTTTCGCTTCACATGTTAGTACGACAGCAGAAACGTCCATGCCACAACATACTCCCTATAACCCCTTATATGACATACCTGTTGGGCAATAC
CCTTTTCCATCATTTAAAGAAGGCCAAATCCCCCAAATACCCATGGCTAGCCAAGCTGAGATCATGACTCCTAAGGAGAAGCTTTTTGAGATTCTCCTCGTTAACGGATA
TGTATCAATAGAGTATGCACACAAGGACCTTGTTCAAGAAGGATTCGATGATAATTTGACTTGCCTATTTCATGCTGGGGCAAAGGGGTATTCTTTCGAACAATGTCATC
ATTTTCATAAGAGGGTCCAAGAACTGGTGGACTCAAAATTTCTTATGGTCACCCAAGCCCATCACCAGGAGGAGGAAATAGACGCCGTGGAAGAATTGCTGCCTAAAGAA
AGTTTGAATTCATCTTTCAAACTGAAGCCACTCACGATCTATTACCGTGAGACGACTACTACTCATGATCCAAAGTCGATCACCATTCAGGTGCCGGCTCCTTTCAAGTA
CAAGAGTTCTAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAACTCATAA
Protein sequenceShow/hide protein sequence
MQAQSEESEAFKSYSSSLERQLQAFQRASEQLSLERGQLEEKYSSLRGDYVIMREDMQIILGKVNQTMNTIKIMARRARGFAEWARDLRENTSPMASNVEELFEFLGMIR
RDLGKIARSTRVYHAYNTRHRTRIMEEKGEQEKTKRDIEEIREKVDAIIAALEKGKMVADTTAPDTPIGNPQAGLPFPPSFASHVSTTAETSMPQHTPYNPLYDIPVGQY
PFPSFKEGQIPQIPMASQAEIMTPKEKLFEILLVNGYVSIEYAHKDLVQEGFDDNLTCLFHAGAKGYSFEQCHHFHKRVQELVDSKFLMVTQAHHQEEEIDAVEELLPKE
SLNSSFKLKPLTIYYRETTTTHDPKSITIQVPAPFKYKSSKAVPWSYEYKVTINS