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Spg000346 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000346
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold8:38823352..38824509
RNA-Seq ExpressionSpg000346
SyntenySpg000346
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]7.5e-0939.05Show/hide
Query:  DSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMAC
        D  S KLN+ ASW+E++ KG + W I DS GS I +  K+L + W +K +E +A++EGL+ YL + E      + ++   F +    LN    DL E++ 
Subjt:  DSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMAC

Query:  VVDEI
        VVDEI
Subjt:  VVDEI

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.7e-0832.21Show/hide
Query:  QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDL
        +W+P      KLN DA+ + K  K  LG  +RD+EG ++ VG KQ      +   EA AI  GL+        + +   L+VE D  + +  LN      
Subjt:  QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDL

Query:  SEMACVVDEIRRKVGA-EQVVFSKCPRLSNSLAHELAQ-AAQSHGDFVW
        +E+  ++ ++RR+    +QV FS  PR  N+ AH LA+ A ++    VW
Subjt:  SEMACVVDEIRRKVGA-EQVVFSKCPRLSNSLAHELAQ-AAQSHGDFVW

XP_015382715.1 uncharacterized protein LOC107175626 [Citrus sinensis]1.3e-0832.64Show/hide
Query:  LSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRE
        +S  +W P      KLN DA+ N K+ K  LG  +RDS G ++  G KQ+     + Y EA AI  GL+        E     L+VE D       +N  
Subjt:  LSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRE

Query:  SEDLSEMACVVDEIR-RKVGAEQVVFSKCPRLSNSLAHELAQAA
            SE+  ++ EI+ +K   +++ F+  PR  N+ AH LA+ A
Subjt:  SEDLSEMACVVDEIR-RKVGAEQVVFSKCPRLSNSLAHELAQAA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.6e-1132.35Show/hide
Query:  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEY
        TNLK +S  K    L+L+  +      QW+P  S SWKLN +A+W   ++ G +GW +RD +G +I    + +     I Y+E  AI EGL A       
Subjt:  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEY

Query:  ERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH
        E  R  + +E D  +AI  L+R+ +D +E+  +++EI + +   ++V  +   R +N +AH LA+ A  +
Subjt:  ERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.4e-1534.04Show/hide
Query:  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPI
        NH        +H++ ST + + T    ES  +   +L++L     + L+WEP     W LNADASW++ + +G +GW IR  +G ++  G + +     +
Subjt:  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPI

Query:  KYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSLAHELAQAA
        K +EA AILEGL    N+G        L +E D  +    LNR+ EDL++   VV+EI   +   E + F+K  R +N  AH LAQ A
Subjt:  KYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSLAHELAQAA

TrEMBL top hitse value%identityAlignment
A0A5B7BU49 RNase H domain-containing protein (Fragment)2.4e-0834.67Show/hide
Query:  WEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLS
        W P     +KLN  ASW    S G +G  IRD +G +IG   KQ+     I + EA AIL GL    ++G  +     L VE D    +  +    EDLS
Subjt:  WEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLS

Query:  EMACVVDEIRR-KVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCD
        E+  V D I++ + G     F    R +NS+AHE+A  A++  D V++ +
Subjt:  EMACVVDEIRR-KVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCD

A0A6J1CP26 uncharacterized protein LOC1110134127.8e-1232.35Show/hide
Query:  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEY
        TNLK +S  K    L+L+  +      QW+P  S SWKLN +A+W   ++ G +GW +RD +G +I    + +     I Y+E  AI EGL A       
Subjt:  TNLKAESKGKCPQTLNLLSHL------QWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEY

Query:  ERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH
        E  R  + +E D  +AI  L+R+ +D +E+  +++EI + +   ++V  +   R +N +AH LA+ A  +
Subjt:  ERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGAEQVVFSK-CPRLSNSLAHELAQAAQSH

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.4e-0738.64Show/hide
Query:  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEA
        TNLK +SK   P + +   +  +W+P  S SWKLN DA+W   ++   +GW +RD +G +I  G + +     I Y+E  AI EGL A
Subjt:  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEA

A0A6J1DNV9 uncharacterized protein LOC1110224031.2e-1534.04Show/hide
Query:  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPI
        NH        +H++ ST + + T    ES  +   +L++L     + L+WEP     W LNADASW++ + +G +GW IR  +G ++  G + +     +
Subjt:  NHSKKPQVSDKHAAPSTTLWK-TNLKAESKGKCPQTLNLL-----SHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPI

Query:  KYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSLAHELAQAA
        K +EA AILEGL    N+G        L +E D  +    LNR+ EDL++   VV+EI   +   E + F+K  R +N  AH LAQ A
Subjt:  KYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEI-RRKVGAEQVVFSKCPRLSNSLAHELAQAA

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X23.4e-0738.64Show/hide
Query:  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEA
        TNLK +SK   P + +   +  +W+P  S SWKLN DA+W   ++   +GW +RD +G +I  G + +     I Y+E  AI EGL A
Subjt:  TNLKAESKGKCP-QTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0523.5Show/hide
Query:  NHSK-KPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEA
        NH++ K Q + + A   T  W  N     +    +  +   + +W P   +  K N DAS +E+++   LGW +R+S+G++I  G  +       +  E 
Subjt:  NHSK-KPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNLLSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEA

Query:  RAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGA-EQVVFSKCPRLSNSLAHELAQAA
          ++  ++A    G       K++ E D       +N +S +   +   +D I+  + + E + FS   R  N  A  LA+ A
Subjt:  RAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACVVDEIRRKVGA-EQVVFSKCPRLSNSLAHELAQAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAA
CCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATC
ATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTC
CTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGA
CTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATA
TGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTC
GTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGG
CGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTG
TTGGTGTACCTAATTTAGCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGAAGAGGGAAAAACTTGGTGGACACTATAATATGGAATCAAGACCCTAAAGGAGCATTCACGGTTAAGAGTGCTTACCACTTGGCTAGAAACATAAGCCTAAA
CCCCAGGGCTTCAGAATCGGACTCCTCATTGACCAAAGCGGTCGAAGAAGGAGAGCACGGTGCATCTATTCTGGGAGTTTCTCAGCAAAGCAGAATTGAACAGAGCAATC
ATAGTAAAAAACCCCAGGTCTCAGACAAACATGCAGCACCATCAACAACCTTATGGAAGACAAACCTGAAGGCGGAGAGCAAAGGCAAATGTCCTCAAACCCTAAACCTC
CTGAGTCACCTCCAATGGGAGCCGTCGGACTCGGAGAGCTGGAAGTTGAATGCAGATGCGTCTTGGAACGAGAAATCAAGCAAAGGTGAGCTGGGATGGGCCATCCGTGA
CTCCGAAGGGTCTTTGATCGGAGTGGGCTACAAGCAATTGTACAAGAACTGGCCGATTAAATATATGGAGGCCAGAGCTATCCTTGAAGGATTAGAAGCGTACCTTAATA
TGGGCGAGTACGAGCGGACGAGATTCAAACTAGTTGTTGAATTTGACTTCAACAAAGCGATTGGGACCCTGAACCGCGAATCAGAAGATCTCTCTGAGATGGCGTGTGTC
GTGGATGAAATCAGGAGAAAAGTGGGAGCTGAGCAGGTCGTCTTCTCCAAATGCCCTCGTCTCAGCAACTCCTTGGCGCACGAGCTTGCGCAAGCAGCTCAGTCCCATGG
CGATTTTGTGTGGTTTTGTGATCGCTCTCTTCCGATTGATAGGGAAGATGAAGTGTTTTGGAGGAAAAATGTGTTTCCCAGCTGGTTTTATGAGATTATTACCAACGGTG
TTGGTGTACCTAATTTAGCTTCTTAA
Protein sequenceShow/hide protein sequence
MRRRGKNLVDTIIWNQDPKGAFTVKSAYHLARNISLNPRASESDSSLTKAVEEGEHGASILGVSQQSRIEQSNHSKKPQVSDKHAAPSTTLWKTNLKAESKGKCPQTLNL
LSHLQWEPSDSESWKLNADASWNEKSSKGELGWAIRDSEGSLIGVGYKQLYKNWPIKYMEARAILEGLEAYLNMGEYERTRFKLVVEFDFNKAIGTLNRESEDLSEMACV
VDEIRRKVGAEQVVFSKCPRLSNSLAHELAQAAQSHGDFVWFCDRSLPIDREDEVFWRKNVFPSWFYEIITNGVGVPNLAS