; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000362 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000362
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:41759420..41766392
RNA-Seq ExpressionSpg000362
SyntenySpg000362
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RAL44540.1 hypothetical protein DM860_011817 [Cuscuta australis]1.8e-1336.41Show/hide
Query:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA
        W  PR    K+N DAS   V++  GLG+IARD EG  + A  K +K R S    E+EAIAV   +L     +   ++++E D  EV+  LN +  D+S  
Subjt:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA

Query:  RSLAEKVEELASI-AGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLNLNSSIPMKSLYCS
         S+ E  + L S+ AG++ F F+PR  N  AH LAR        SSC+D +E S    G +    L PWL    ++     Y S
Subjt:  RSLAEKVEELASI-AGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLNLNSSIPMKSLYCS

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.8e-1435.71Show/hide
Query:  VSREGQ---ALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAI--AVSLRSLLSSMERPLPRLII
        VS+ G    A +  +  ++W PP Q V K+N DA+ S  +Q+ GLG I RD+EG ++  G KQ +FR  +   E EAI   + + + +SS       LI+
Subjt:  VSREGQ---ALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAI--AVSLRSLLSSMERPLPRLII

Query:  EADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW
        E+D  EV+ +LN +    +E   +   V   +    +V F+F PR  NT AH LA+FA   NS +  W
Subjt:  EADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW

XP_013694754.1 uncharacterized protein LOC106398790 [Brassica napus]2.7e-1231.97Show/hide
Query:  LSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSE
        +  RRWTPP QG  K N+DA+W +  + GG+GW+ RD  G ++ AG K+L    S+   E+EA+  ++R+L     R    +  E+DS  ++ +LN   E
Subjt:  LSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSE

Query:  DFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNS
         +   + + + +    S   +V   + PR  N  AH +A+  T   S
Subjt:  DFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNS

XP_015382715.1 uncharacterized protein LOC107175626 [Citrus sinensis]3.5e-1232.9Show/hide
Query:  LSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSE
        +S +RW+PP + V K+N DA+ +  NQ+ GLG + RDS G ++ AG KQ+ FR  +   E EAI   L+    + E     LI+E D  +V  ++N +  
Subjt:  LSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSE

Query:  DFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL
          SE   +  +++        + F F PR  N  AH+LA+ A   ++ +   D L
Subjt:  DFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.4e-1536.57Show/hide
Query:  TSSPSSTNLPLVSREGQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLS-SMER
        +S  S T+L ++ +    L N L   +W PP   +W +N+DASWS+   RGG+GWI R  +G ++ AG + ++   ++K LE  AI   LR+L +  + R
Subjt:  TSSPSSTNLPLVSREGQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLS-SMER

Query:  PLPRLIIEADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW
        PL    IE DS+EV S+LNR  ED ++   + E++  L      + F    R+TN  AH+LA+ A+ L   S  W
Subjt:  PLPRLIIEADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW

TrEMBL top hitse value%identityAlignment
A0A328DH73 RNase H domain-containing protein8.9e-1436.41Show/hide
Query:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA
        W  PR    K+N DAS   V++  GLG+IARD EG  + A  K +K R S    E+EAIAV   +L     +   ++++E D  EV+  LN +  D+S  
Subjt:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA

Query:  RSLAEKVEELASI-AGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLNLNSSIPMKSLYCS
         S+ E  + L S+ AG++ F F+PR  N  AH LAR        SSC+D +E S    G +    L PWL    ++     Y S
Subjt:  RSLAEKVEELASI-AGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLNLNSSIPMKSLYCS

A0A6J1DNV9 uncharacterized protein LOC1110224032.1e-1536.57Show/hide
Query:  TSSPSSTNLPLVSREGQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLS-SMER
        +S  S T+L ++ +    L N L   +W PP   +W +N+DASWS+   RGG+GWI R  +G ++ AG + ++   ++K LE  AI   LR+L +  + R
Subjt:  TSSPSSTNLPLVSREGQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLS-SMER

Query:  PLPRLIIEADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW
        PL    IE DS+EV S+LNR  ED ++   + E++  L      + F    R+TN  AH+LA+ A+ L   S  W
Subjt:  PLPRLIIEADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCW

A0A6J5UE59 Reverse transcriptase domain-containing protein3.7e-1234.67Show/hide
Query:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA
        W  P  G+ K+N DA+WS     GG+GW+ RDS G L+CAG +      S   +EL AI     +L       L  +I+E+DS + I +LN  +   S+ 
Subjt:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA

Query:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL
          +   + +L +    V F F+PR  N  AH++A FA+    G+  WD L
Subjt:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL

A0A6J5UF50 Uncharacterized protein3.7e-1234.67Show/hide
Query:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA
        W  P  G+ K+N DA+WS     GG+GW+ RDS G L+CAG +      S   +EL AI     +L       L  +I+E+DS + I +LN  +   S+ 
Subjt:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA

Query:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL
          +   + +L +    V F F+PR  N  AH++A FA+    G+  WD L
Subjt:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL

A0A6J5WPU6 Reverse transcriptase domain-containing protein1.1e-1134Show/hide
Query:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA
        W  P  G+ K+N DA+WS     GG+GW+ RDS G L+CAG +      S   +EL AI     +L       L  +I+E+DS + I +LN  +   S+ 
Subjt:  WTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSEA

Query:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL
          +   + +L +    V F F+PR  N  AH++A F +    G+  WD L
Subjt:  RSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-1034.9Show/hide
Query:  GQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMER-PLPRLIIEADSSEVI
        G  +E  LS +   PP Q V K N+DA+W   N R G+GWI R+  G ++  G + L    ++   ELEA    LR  + +M R    R+I E+D+  ++
Subjt:  GQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMER-PLPRLIIEADSSEVI

Query:  SVLNRSSEDF-SEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLAR
        ++LN  S+DF    +   E +++L     EV F F+PR  N  A  +AR
Subjt:  SVLNRSSEDF-SEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLAR

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-1133.8Show/hide
Query:  NLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRS
        N  S  RW PP     K N+DA+W+  N+R G+GW+ R+ +G +   G + L    S+   ELEA+  ++ SL          +I E+DS  +I +LN +
Subjt:  NLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRS

Query:  SEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLAR
         E +   +   + ++ L S   EV F F PR+ NT A  +AR
Subjt:  SEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0725.15Show/hide
Query:  RWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSE
        +W+PP +   K N DAS  E N   GLGWI R+S+G +I  G  + + R + +  E   +  ++++      +   ++I E D+  +  ++N  S +   
Subjt:  RWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLIIEADSSEVISVLNRSSEDFSE

Query:  ARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLN
         +   + ++        + F+F  R+ N  A  LA+ A   N+    W    S        C  FL P++N
Subjt:  ARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCAGTCAACGGAGGTCGGCGACAACCGGTAGTCGGAGGTGGACGGTGGCGATCGGTCGGTGGAGGTCAACGGCAGCCGGTCGTCGAAGGTCGATGGTAGCAGT
CGGCCGCGACCGATATTCGAAGGTCACGATGGCGGCTTGTCGGTATAGGCCGATAGTCGGAGGTCGACGGTGGCAGTTGGTTGGTGGAGGCCGGTCAGCGGAGAACCTGA
ATGAAGAAGTTGTGGAAGAGAGTCTGAGGAGAGAAGCGGAGATATCTGGGTGGTGTGAGTGGATGGACAGATGTGTAAGGCCTAAACTACGAGCTCGGGGGCAAGACGAG
GATGATTCACGGGTTGGAACGAGGCTGTCCCTTAGTGTGTGGTGGTTTTCTTGGGTTTTGCTTGTTGATGCCAAAATCCGGACAGAGGACTCACTTGGCCTTCACGTGAC
ACCAACAGTGAATTTGGTTTTTCGGAATCCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCGATTCGGGGCATCAGGGACCGAAAAGAGGCCACCGGGCTCGGCC
CGCACAAGCGGGCCAAATGTTGCCGAGGCCGACCATATGGGTCGGGCCATGTCGGCCCGACCCTTTGGTCCGGTCTTCCTCTGGGTCGGTCTTTTTGTCCTACCTCTGTT
CGATTGTCCTCGTCAGCTCCTTGTGCTCCCGTGTGGTCCAAAATTACCTATAACATTACTGTAATTTTGGACCACTCCGACGTACAAGGAGCTGACGAGGACAACCGGGT
AGAAATAGGACTGGGAGATGGACCCCAGAGGCAAAACCGACGAGTGGGACGAGCCAAGACCGAAGGGGTCGGGCTTTTGGGCCGACCCCATGCTCGACCTCAGCCTTGGG
CCGAGGCCGAGGCCCATGGTCGGCCTCGGCATGGGTCGAGGCCGAGTCCCTCCGACTCCGTTCGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACT
CTCTTGCAGGCCACATCTTCCCCCTCATCTACAAATTTACCGTTGGTGTCACGTGAAGGTCAGGCGCTGGAGAACCTCTTGAGTCATAGGCGCTGGACCCCCCCTCGTCA
AGGTGTGTGGAAGATCAATTCGGATGCTTCTTGGTCTGAGGTGAATCAGAGAGGCGGTCTTGGATGGATTGCTCGTGACTCCGAAGGTTGTCTGATCTGTGCGGGATTCA
AGCAATTGAAGTTTAGATGGTCTATTAAATGCCTTGAATTGGAAGCAATTGCTGTAAGTCTAAGAAGCTTACTGTCAAGCATGGAAAGGCCGCTCCCCAGATTGATTATC
GAAGCTGATTCTTCCGAAGTTATCTCTGTTCTCAATCGATCATCTGAGGACTTTTCGGAAGCTAGAAGTCTGGCAGAGAAGGTCGAGGAGTTGGCGTCAATCGCGGGGGA
GGTTGTCTTCACCTTCAGCCCGCGGGATACAAACACCGAAGCGCACAATCTTGCGCGATTTGCAACTGCCTTGAATTCGGGTAGTTCTTGCTGGGATTTTTTGGAGTCTT
CCATATCGGGAGATGGTTTTGTTTGTAAGGGGTTTTTGCCCCCTTGGCTGAACTTGAACTCTTCGATTCCGATGAAGAGCCTTTATTGTTCTAGTGTGGTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCAGTCAACGGAGGTCGGCGACAACCGGTAGTCGGAGGTGGACGGTGGCGATCGGTCGGTGGAGGTCAACGGCAGCCGGTCGTCGAAGGTCGATGGTAGCAGT
CGGCCGCGACCGATATTCGAAGGTCACGATGGCGGCTTGTCGGTATAGGCCGATAGTCGGAGGTCGACGGTGGCAGTTGGTTGGTGGAGGCCGGTCAGCGGAGAACCTGA
ATGAAGAAGTTGTGGAAGAGAGTCTGAGGAGAGAAGCGGAGATATCTGGGTGGTGTGAGTGGATGGACAGATGTGTAAGGCCTAAACTACGAGCTCGGGGGCAAGACGAG
GATGATTCACGGGTTGGAACGAGGCTGTCCCTTAGTGTGTGGTGGTTTTCTTGGGTTTTGCTTGTTGATGCCAAAATCCGGACAGAGGACTCACTTGGCCTTCACGTGAC
ACCAACAGTGAATTTGGTTTTTCGGAATCCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCGATTCGGGGCATCAGGGACCGAAAAGAGGCCACCGGGCTCGGCC
CGCACAAGCGGGCCAAATGTTGCCGAGGCCGACCATATGGGTCGGGCCATGTCGGCCCGACCCTTTGGTCCGGTCTTCCTCTGGGTCGGTCTTTTTGTCCTACCTCTGTT
CGATTGTCCTCGTCAGCTCCTTGTGCTCCCGTGTGGTCCAAAATTACCTATAACATTACTGTAATTTTGGACCACTCCGACGTACAAGGAGCTGACGAGGACAACCGGGT
AGAAATAGGACTGGGAGATGGACCCCAGAGGCAAAACCGACGAGTGGGACGAGCCAAGACCGAAGGGGTCGGGCTTTTGGGCCGACCCCATGCTCGACCTCAGCCTTGGG
CCGAGGCCGAGGCCCATGGTCGGCCTCGGCATGGGTCGAGGCCGAGTCCCTCCGACTCCGTTCGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTACT
CTCTTGCAGGCCACATCTTCCCCCTCATCTACAAATTTACCGTTGGTGTCACGTGAAGGTCAGGCGCTGGAGAACCTCTTGAGTCATAGGCGCTGGACCCCCCCTCGTCA
AGGTGTGTGGAAGATCAATTCGGATGCTTCTTGGTCTGAGGTGAATCAGAGAGGCGGTCTTGGATGGATTGCTCGTGACTCCGAAGGTTGTCTGATCTGTGCGGGATTCA
AGCAATTGAAGTTTAGATGGTCTATTAAATGCCTTGAATTGGAAGCAATTGCTGTAAGTCTAAGAAGCTTACTGTCAAGCATGGAAAGGCCGCTCCCCAGATTGATTATC
GAAGCTGATTCTTCCGAAGTTATCTCTGTTCTCAATCGATCATCTGAGGACTTTTCGGAAGCTAGAAGTCTGGCAGAGAAGGTCGAGGAGTTGGCGTCAATCGCGGGGGA
GGTTGTCTTCACCTTCAGCCCGCGGGATACAAACACCGAAGCGCACAATCTTGCGCGATTTGCAACTGCCTTGAATTCGGGTAGTTCTTGCTGGGATTTTTTGGAGTCTT
CCATATCGGGAGATGGTTTTGTTTGTAAGGGGTTTTTGCCCCCTTGGCTGAACTTGAACTCTTCGATTCCGATGAAGAGCCTTTATTGTTCTAGTGTGGTTGGTTAA
Protein sequenceShow/hide protein sequence
MEASQRRSATTGSRRWTVAIGRWRSTAAGRRRSMVAVGRDRYSKVTMAACRYRPIVGGRRWQLVGGGRSAENLNEEVVEESLRREAEISGWCEWMDRCVRPKLRARGQDE
DDSRVGTRLSLSVWWFSWVLLVDAKIRTEDSLGLHVTPTVNLVFRNPEVFRDEPGGTGAIRGIRDRKEATGLGPHKRAKCCRGRPYGSGHVGPTLWSGLPLGRSFCPTSV
RLSSSAPCAPVWSKITYNITVILDHSDVQGADEDNRVEIGLGDGPQRQNRRVGRAKTEGVGLLGRPHARPQPWAEAEAHGRPRHGSRPSPSDSVRIGGGVASTTPVCRFT
LLQATSSPSSTNLPLVSREGQALENLLSHRRWTPPRQGVWKINSDASWSEVNQRGGLGWIARDSEGCLICAGFKQLKFRWSIKCLELEAIAVSLRSLLSSMERPLPRLII
EADSSEVISVLNRSSEDFSEARSLAEKVEELASIAGEVVFTFSPRDTNTEAHNLARFATALNSGSSCWDFLESSISGDGFVCKGFLPPWLNLNSSIPMKSLYCSSVVG