CuGenDBv2

Gene ID	Spg000391
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	50S ribosomal protein L20
Genome location	scaffold8:43147035..43152738
RNA-Seq Expression	Spg000391
Synteny	Spg000391
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKDGIS+VL
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]

2.4e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVV PPKKDGISIV+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

XP_022947351.1 uncharacterized protein LOC111451238 [Cucurbita moschata]

2.4e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKDGIS+VL
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

4.1e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKD +S+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]

4.9e-63

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKDGIS+VL
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D684 50S ribosomal protein L20

1.2e-62

97.6

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVV PPKKDGISIV+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

A0A6J1FUI3 50S ribosomal protein L20

2.6e-62

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKD +S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

A0A6J1G662 50S ribosomal protein L20

1.2e-62

96.8

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRL+GVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKDGIS+VL
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

A0A6J1JCG1 50S ribosomal protein L20

2.0e-62

96.8

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKD +S+V+
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

A0A6J1KY75 50S ribosomal protein L20

2.4e-63

97.6

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSELSMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIVL
        ISRNAFPGNKNVVFPPKKDGIS+VL
Subjt:  ISRNAFPGNKNVVFPPKKDGISIVL

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

7.9e-32

63.37

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+++  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q11KK1 50S ribosomal protein L20

1.8e-28

56.07

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  AFPGNKN
        +    KN
Subjt:  AFPGNKN

Q2GHR2 50S ribosomal protein L20

1.1e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

2.2e-29

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

2.4e-28

56.44

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

8.1e-56

83.87

Show/hide

Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSELSMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVD

Query:  ISRNAFPGNKNVVFPPKKDGISIV
        +SR +FPGNKNVV   +K  IS +
Subjt:  ISRNAFPGNKNVVFPPKKDGISIV

ATCG00660.1 ribosomal protein L20

1.1e-09

38.2

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSELSM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGCAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAG
GGACCGTCGCAATAAGAAGCGTGACATGCGTTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTAAATTATGGCAATTTCATGCATGGGCTGATGA
AGGAGAACGTTCAACTAAATAGAAAAGTATTATCAGAGCTCTCAATGCACGAACCTTACAGTTTCAAGGCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCCAAGAAGGATGGCATTTCCATAGTTCTTTAA

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSELSMHEPYSFKALVDISRNAFPGNK
NVVFPPKKDGISIVL

Spg000391 (gene) of Sponge gourd (cylindrica) v1 genome