CuGenDBv2

Gene ID	Spg000413
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box protein SNE
Genome location	scaffold8:40308266..40308724
RNA-Seq Expression	Spg000413
Synteny	Spg000413
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

5.5e-77

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

8.5e-78

96.05

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

2.1e-76

94.74

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

1.2e-76

95.39

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCT AR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

2.7e-79

98.03

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

4.1e-78

96.05

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GG+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

1.0e-76

94.74

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

2.7e-77

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCT ARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR+GGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

6.0e-77

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCT AR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

6.0e-77

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCT AR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGRL GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

2.7e-10

34.78

Show/hide

Query:  DILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  +L  AACV R W   A  E +WE  C R   +       +++VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

1.4e-35

54.55

Show/hide

Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW   AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL     L GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

3.4e-13

36.75

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W  TA+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

2.4e-14

36.75

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W  TA+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.0e-36

54.55

Show/hide

Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  AACVCRLW   AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL     L GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCTGAGCCGAACGAGAAGCGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTGGACGGACCGTCGCT
CGGCGTCGCGGCCTGTGTCTGCCGCCTCTGGTGCACGACCGCTCGAAGCGAATCGGTATGGGAACAGGTCTGCTTCCGGCACGTGACGTCGCCGCTTCCGTCGTCGGTGA
AATCGGTGGTGGCCGCCCTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAG
GACGAGGTTCAACTTTCGCTGTCTCTGTTCTGTGTGGATTATTACGAGCGGCTCACCGGGAGTGGGAGACTCGGCGGCGATGCGTCCGCATTGTCGCTCATGTTCCTCTG
CAACACTGTGAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTTARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQ
DEVQLSLSLFCVDYYERLTGSGRLGGDASALSLMFLCNTVNV

Spg000413 (gene) of Sponge gourd (cylindrica) v1 genome