CuGenDBv2

Gene ID	Spg000445
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transmembrane E3 ubiquitin-protein ligase 1-like isoform X2
Genome location	scaffold8:41801613..41802852
RNA-Seq Expression	Spg000445
Synteny	Spg000445
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0062140.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X1 [Cucumis melo var. makuwa]

7.3e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

KAG7034909.1 Switch 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-45

71.81

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSS---ELYLDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNISCKS
        NGERDHYHI+GLMESPAVDDDGDCFSPL LNATSVNI +    +    L +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC         
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSS---ELYLDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNISCKS

Query:  YSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
            + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRPTNN
Subjt:  YSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

TYK04895.1 transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Cucumis melo var. makuwa]

7.3e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

XP_008448262.1 PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like isoform X1 [Cucumis melo]

7.3e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

XP_008448263.1 PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Cucumis melo]

7.3e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGU2 RING-type domain-containing protein

6.0e-45

69.93

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVS+LMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

A0A1S3BIP6 transmembrane E3 ubiquitin-protein ligase 1-like isoform X1

3.5e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

A0A1S3BJA5 transmembrane E3 ubiquitin-protein ligase 1-like isoform X2

3.5e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

A0A5A7V4B6 Transmembrane E3 ubiquitin-protein ligase 1-like isoform X1

3.5e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

A0A5D3C0M1 Transmembrane E3 ubiquitin-protein ligase 1-like isoform X2

3.5e-45

70.59

Show/hide

Query:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI
        VNGE DHYHIEGLMESPAVDDDGDCFSPLVLNATSVNI +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSILMIGQQAI+DAYLC     
Subjt:  VNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNI

Query:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
                + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKASRP NN
Subjt:  SCKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

SwissProt top hits

e value

%identity

Alignment

Q500V2 Transmembrane E3 ubiquitin-protein ligase FLY2

3.3e-40

61.18

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS
        NG++D Y IEGLMESPAVDD+ DCFSPL LNATS+N+ +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSI+MIGQQAI+D+YLC      
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS

Query:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
               + A    ESL NAFATAAFFKFVVF IFEMRYLL+IWKA+RP+ +
Subjt:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

Q5PP23 Transmembrane E3 ubiquitin-protein ligase FLY1

4.6e-42

62.5

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS
        NG++++YH+EGLMESP V DDGDCFSPL+LNATSVN+ +    +  Y      +    +LLLIRQMEH NTQSGAAKVSI+MIGQQAI+DAYLC      
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS

Query:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
               + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKA+RP+N+
Subjt:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

Arabidopsis top hits

e value

%identity

Alignment

AT2G20650.1 RING/U-box superfamily protein

2.3e-41

61.18

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS
        NG++D Y IEGLMESPAVDD+ DCFSPL LNATS+N+ +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSI+MIGQQAI+D+YLC      
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS

Query:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
               + A    ESL NAFATAAFFKFVVF IFEMRYLL+IWKA+RP+ +
Subjt:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

AT2G20650.2 RING/U-box superfamily protein

2.3e-41

61.18

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS
        NG++D Y IEGLMESPAVDD+ DCFSPL LNATS+N+ +    +  Y      +    +LLLIRQMEHSNTQSGAAKVSI+MIGQQAI+D+YLC      
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS

Query:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
               + A    ESL NAFATAAFFKFVVF IFEMRYLL+IWKA+RP+ +
Subjt:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

AT4G28370.1 RING/U-box superfamily protein

3.2e-43

62.5

Show/hide

Query:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS
        NG++++YH+EGLMESP V DDGDCFSPL+LNATSVN+ +    +  Y      +    +LLLIRQMEH NTQSGAAKVSI+MIGQQAI+DAYLC      
Subjt:  NGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELY------LDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNIS

Query:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN
               + A    ESL NAFATAAFFKFVVF IFEMRYLLAIWKA+RP+N+
Subjt:  CKSYSFDIVAVFSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTACCTTGCAGTAAATGGAGAACGTGACCATTACCATATCGAAGGATTAATGGAGAGTCCTGCAGTAGACGATGATGGAGATTGTTTTTCACCCTTAGTATTAAATGC
CACTTCTGTCAACATCTATCTACTACAACAAAGCAGTGAATTATACCTTGATGGTTACTTTTTACTTCTCTTAATTCGGCAAATGGAACATAGCAACACTCAATCTGGTG
CGGCCAAAGTTTCGATACTAATGATTGGGCAACAGGCTATTATTGATGCTTATCTATGCGACAGCTGGAATATTAGTTGTAAATCTTATTCATTTGACATTGTTGCTGTC
TTTTCTTCAGAATCCTTATCTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTCGTGTTCTTAATTTTTGAGATGAGATATCTTCTTGCAATATGGAAAGCCAGTAG
GCCTACGAACAATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MYLAVNGERDHYHIEGLMESPAVDDDGDCFSPLVLNATSVNIYLLQQSSELYLDGYFLLLLIRQMEHSNTQSGAAKVSILMIGQQAIIDAYLCDSWNISCKSYSFDIVAV
FSSESLSNAFATAAFFKFVVFLIFEMRYLLAIWKASRPTNN

Spg000445 (gene) of Sponge gourd (cylindrica) v1 genome