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Spg000481 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000481
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationscaffold8:47074246..47074566
RNA-Seq ExpressionSpg000481
SyntenySpg000481
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]4.9e-3280.37Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS+ ARRPL+VAKAST N ASN N+E+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]7.1e-3179.44Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

XP_022148791.1 photosystem II 5 kDa protein, chloroplastic [Momordica charantia]3.4e-2575Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAS--TNDASNANLEM-KNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVT
        MAS A+ ASFLP+  AKHPSAA RR L+VAKAS   NDAS  NLEM ++V+VE+  QGRRELVAAAVTVAAA+LAK AMADEPK G+ EAKQKYA VCVT
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAS--TNDASNANLEM-KNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVT

Query:  MPTARICR
        MPTARICR
Subjt:  MPTARICR

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]1.5e-2571.17Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  G+ EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]2.9e-3283.18Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS AARR LVVAKAST +DASN NLE+KNVKVENR QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein2.4e-3280.37Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PS+ ARRPL+VAKAST N ASN N+E+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic3.5e-3179.44Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

A0A5A7TID9 Photosystem II 5 kDa protein3.5e-3179.44Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MASMAMTASFLP  A K PSA  RR L+VAKAST N+ SN NLE+KNVKVE+R QGRRELVAAAVTVAAA+LAK AMADEP  G+PEAKQKYA +CVTMP
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKAST-NDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICRK
        TARICRK
Subjt:  TARICRK

A0A6J1FY72 photosystem II 5 kDa protein, chloroplastic7.5e-2671.17Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  G+ EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic7.5e-2671.17Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC
        MASM++TASFLP  A +  +AAARR L V KAST+ A     SNANLE+KNVKVE+  QGRRELVAAAVTVAAA+ AK AMADEP  G+ EAKQKYA +C
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDA-----SNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVC

Query:  VTMPTARICRK
        VTMPTARICRK
Subjt:  VTMPTARICRK

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.4e-1353.21Show/hide
Query:  MASMAMTASFL---PVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMAD-EPKPGTPEAKQKYAVVCV
        MAS+ M +SFL    VA AK PS A RR +V+ KA     +N  +       E++  GRREL  A    AA S+AK AMAD EPK GTPEAK+KY+ VCV
Subjt:  MASMAMTASFL---PVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMAD-EPKPGTPEAKQKYAVVCV

Query:  TMPTARICR
        T PTARICR
Subjt:  TMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic1.6e-0947.17Show/hide
Query:  MASMAMTASFLPVA-AAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP
        MAS+ MT SFL      K      +R LVVA A+   A   +++M   +      GRRE++ AA   A  S+A VA A EPK G+ EAK+ YA VCVTMP
Subjt:  MASMAMTASFLPVA-AAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic3.3e-1555.14Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGTPEAKQKYAVVCVTM
        MASM MTA+F P A AK PSA   R L V +AST+D    N     VK ++    RR+L+  A   A  SLAKVAMA  +EPK GT  AK+KYA VCVTM
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGTPEAKQKYAVVCVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein6.9e-1653.7Show/hide
Query:  MASMAMTASFLPVAA--AKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA-DEPKPGTPEAKQKYAVVCVT
        MASM MT+SFLP  +    + S+ +RR L V KAS    S     ++N K E   + RR+LV  A   A  SLAKVAMA DEPK GT  AK+KYA VCVT
Subjt:  MASMAMTASFLPVAA--AKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA-DEPKPGTPEAKQKYAVVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

AT3G21055.1 photosystem II subunit T2.4e-1655.14Show/hide
Query:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGTPEAKQKYAVVCVTM
        MASM MTA+F P A AK PSA   R L V +AST+D    N     VK ++    RR+L+  A   A  SLAKVAMA  +EPK GT  AK+KYA VCVTM
Subjt:  MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMA--DEPKPGTPEAKQKYAVVCVTM

Query:  PTARICR
        PTA+ICR
Subjt:  PTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCGCCGCCGCCAAGCACCCCTCCGCCGCTGCTCGGAGACCCCTCGTCGTCGCCAAGGCCTCCACCAACGACGC
CTCTAACGCCAACTTGGAGATGAAGAATGTCAAGGTGGAGAACAGGCAGCAGGGGCGGCGGGAGTTGGTGGCAGCCGCTGTGACGGTGGCGGCGGCCAGCTTGGCGAAGG
TAGCGATGGCGGACGAGCCCAAGCCCGGCACTCCTGAAGCCAAGCAAAAGTATGCCGTTGTGTGCGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCATGGCTATGACAGCCTCCTTCCTCCCCGTCGCCGCCGCCAAGCACCCCTCCGCCGCTGCTCGGAGACCCCTCGTCGTCGCCAAGGCCTCCACCAACGACGC
CTCTAACGCCAACTTGGAGATGAAGAATGTCAAGGTGGAGAACAGGCAGCAGGGGCGGCGGGAGTTGGTGGCAGCCGCTGTGACGGTGGCGGCGGCCAGCTTGGCGAAGG
TAGCGATGGCGGACGAGCCCAAGCCCGGCACTCCTGAAGCCAAGCAAAAGTATGCCGTTGTGTGCGTCACAATGCCCACTGCCCGTATTTGCCGCAAGTGA
Protein sequenceShow/hide protein sequence
MASMAMTASFLPVAAAKHPSAAARRPLVVAKASTNDASNANLEMKNVKVENRQQGRRELVAAAVTVAAASLAKVAMADEPKPGTPEAKQKYAVVCVTMPTARICRK