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Spg000490 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000490
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold8:35966711..35969186
RNA-Seq ExpressionSpg000490
SyntenySpg000490
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96591.1 uncharacterized protein E5676_scaffold1278G00090 [Cucumis melo var. makuwa]7.0e-4056.62Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL+EIPCAHAL+V+   NLN Y+FVS YY++  LS+TY G V  +GNH++WS +  N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV   +KC RC R  HN RTC+F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]1.4e-4057.35Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL+EIPCAHAL+V+   NLN Y+FVS YY++  LS+TY G V  +GNH++WS ++ N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV   +KC RC R GHN RTC+F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

XP_008467000.1 PREDICTED: uncharacterized protein LOC103504407, partial [Cucumis melo]5.7e-4259.57Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+ I++ +F+VI+G   FIV+LD KSC+CRVWDLD+IPCAHAL VL GR++NTYSFVS Y+ S TL STY G V  VGNH+ W SI    N+LPP  KR+
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKFSLFIQ
        AG+ +KQR+LSIGE ++ ++C  CHR GHN R CKF  F+Q
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKFSLFIQ

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]2.0e-5066.67Show/hide
Query:  YNEAALKHVDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNV
        +N++    VDPI+NE++KVIDGDN+F+V L  KSCSCRVWDL EIPCAHA  V+ G NL+ Y+FV DYYF  TL STY+G V+ +GNHS+W SID  VNV
Subjt:  YNEAALKHVDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNV

Query:  LPPVVKRQAGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        LPP+VKR  GRPRKQR+LSIGE +  +KC RCHR GHNCRTCKF
Subjt:  LPPVVKRQAGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]6.3e-4158.45Show/hide
Query:  VEASLAKND--QVYNEAALKHVDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGN
        V  S A+N+    +N++    VD I+NE++KV+DGDN+++V + SKSCSC  WDL+EIPCAHA  VL   NL++Y+FVSDYYFS T SSTY+  +H +GN
Subjt:  VEASLAKND--QVYNEAALKHVDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGN

Query:  HSEWSSIDGNVNVLPPVVKRQAGRPRKQRMLSIGEVRNRTKC
        HS+WSS+D + NVLPP+VKRQ GRPRKQR+LS+GE R+  KC
Subjt:  HSEWSSIDGNVNVLPPVVKRQAGRPRKQRMLSIGEVRNRTKC

TrEMBL top hitse value%identityAlignment
A0A1S3CSI6 uncharacterized protein LOC1035044072.8e-4259.57Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+ I++ +F+VI+G   FIV+LD KSC+CRVWDLD+IPCAHAL VL GR++NTYSFVS Y+ S TL STY G V  VGNH+ W SI    N+LPP  KR+
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKFSLFIQ
        AG+ +KQR+LSIGE ++ ++C  CHR GHN R CKF  F+Q
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKFSLFIQ

A0A5A7SST5 MuDRA-like transposase7.6e-4056.62Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL EIPCAHAL+V+   NLN Y+FV  YY++  L +TY G V  +GNH++WS ++ N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV    KC RC RVGHN RTC+F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

A0A5A7TVL2 ZnF_PMZ domain-containing protein9.9e-4056.62Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL+EIPCA AL+V+   NLN Y+FVS YY++  LS+TY G V  +GNH++WS ++ N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV   +KC RC R GHN RTC F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

A0A5D3BD68 SWIM-type domain-containing protein3.4e-4056.62Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL+EIPCAHAL+V+   NLN Y+FVS YY++  LS+TY G V  +GNH++WS +  N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV   +KC RC R  HN RTC+F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

A0A5D3BVP4 SWIM-type domain-containing protein6.8e-4157.35Show/hide
Query:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ
        V+P+S  +F+V+DG   F+VKL+  SCSC  WDL+EIPCAHAL+V+   NLN Y+FVS YY++  LS+TY G V  +GNH++WS ++ N N+LPPV +R 
Subjt:  VDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQ

Query:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF
        AGRPRK+R+ SIGEV   +KC RC R GHN RTC+F
Subjt:  AGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64260.1 MuDR family transposase1.3e-0422.03Show/hide
Query:  LFVEASLAKNDQVYNEAALKHVDPISNEQFKVIDGD--NYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLV
        ++ E  + K ++   ++    +  +  + FKV +      +IV+L+  +C+CR +   + PC HAL V     +N   +V + Y       TY      V
Subjt:  LFVEASLAKNDQVYNEAALKHVDPISNEQFKVIDGD--NYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTYSFVSDYYFSRTLSSTYRGFVHLV

Query:  GNHSEWSSIDGNVNVLPP
         + + W        + PP
Subjt:  GNHSEWSSIDGNVNVLPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGCTGATAGAAAGAGATGGGAATTTCGTGGGTTCAGGGTTTAACATGGGCATTTCGAAGAAATTTCCAGTGAAGAAACTAAGAAGGGTTGCTGCGTTTTTGTT
CGTTGAAGCGTCGTTGGCGAAGAACGATCAAGTCTACAACGAAGCGGCTTTAAAGCATGTTGATCCTATTAGTAACGAACAATTCAAAGTAATTGACGGAGATAACTATT
TCATTGTGAAGTTGGATTCGAAATCATGTAGTTGTCGTGTTTGGGATCTTGATGAAATCCCATGTGCTCATGCACTTGTTGTTCTTGGTGGGCGGAATTTGAATACTTAT
TCTTTTGTCTCAGATTATTACTTTTCAAGAACATTGTCATCAACTTATAGAGGTTTTGTTCATCTCGTCGGTAATCATTCTGAATGGAGCTCTATAGATGGAAACGTGAA
TGTGTTGCCTCCAGTTGTTAAACGTCAAGCAGGAAGACCTAGAAAACAGAGGATGCTATCAATTGGTGAAGTAAGAAATCGTACAAAATGTAGACGTTGTCATCGTGTTG
GTCACAATTGTAGGACATGTAAATTTTCACTATTCATACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGCTGATAGAAAGAGATGGGAATTTCGTGGGTTCAGGGTTTAACATGGGCATTTCGAAGAAATTTCCAGTGAAGAAACTAAGAAGGGTTGCTGCGTTTTTGTT
CGTTGAAGCGTCGTTGGCGAAGAACGATCAAGTCTACAACGAAGCGGCTTTAAAGCATGTTGATCCTATTAGTAACGAACAATTCAAAGTAATTGACGGAGATAACTATT
TCATTGTGAAGTTGGATTCGAAATCATGTAGTTGTCGTGTTTGGGATCTTGATGAAATCCCATGTGCTCATGCACTTGTTGTTCTTGGTGGGCGGAATTTGAATACTTAT
TCTTTTGTCTCAGATTATTACTTTTCAAGAACATTGTCATCAACTTATAGAGGTTTTGTTCATCTCGTCGGTAATCATTCTGAATGGAGCTCTATAGATGGAAACGTGAA
TGTGTTGCCTCCAGTTGTTAAACGTCAAGCAGGAAGACCTAGAAAACAGAGGATGCTATCAATTGGTGAAGTAAGAAATCGTACAAAATGTAGACGTTGTCATCGTGTTG
GTCACAATTGTAGGACATGTAAATTTTCACTATTCATACAATGA
Protein sequenceShow/hide protein sequence
MEKLIERDGNFVGSGFNMGISKKFPVKKLRRVAAFLFVEASLAKNDQVYNEAALKHVDPISNEQFKVIDGDNYFIVKLDSKSCSCRVWDLDEIPCAHALVVLGGRNLNTY
SFVSDYYFSRTLSSTYRGFVHLVGNHSEWSSIDGNVNVLPPVVKRQAGRPRKQRMLSIGEVRNRTKCRRCHRVGHNCRTCKFSLFIQ