CuGenDBv2

Gene ID	Spg000590
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein MET1, chloroplastic
Genome location	scaffold8:48187690..48188687
RNA-Seq Expression	Spg000590
Synteny	Spg000590
Gene Ontology terms	GO:0009611 - response to wounding (biological process) GO:0009644 - response to high light intensity (biological process) GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0009575 - chromoplast stroma (cellular component) GO:0031969 - chloroplast membrane (cellular component) GO:0035448 - extrinsic component of thylakoid membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004149641.1 protein MET1, chloroplastic [Cucumis sativus]

2.8e-49

97.14

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSN+RTLEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

XP_008449894.1 PREDICTED: uncharacterized protein LOC103491636 isoform X1 [Cucumis melo]

4.1e-48

96.19

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDFKRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

XP_016900751.1 PREDICTED: uncharacterized protein LOC103491636 isoform X2 [Cucumis melo]

4.1e-48

96.19

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDFKRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

XP_022996247.1 protein MET1, chloroplastic [Cucurbita maxima]

1.2e-47

93.4

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLN+LKAGLSALEDAL AGFEDFKR+RTDPDLSNLRTLEEFE L+KRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFKK
        LFGFKK
Subjt:  LFGFKK

XP_038902944.1 protein MET1, chloroplastic [Benincasa hispida]

4.4e-50

98.11

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFKK
        LFGFKK
Subjt:  LFGFKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWR6 Uncharacterized protein

1.4e-49

97.14

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSN+RTLEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

A0A1S3BMG9 uncharacterized protein LOC103491636 isoform X1

2.0e-48

96.19

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDFKRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

A0A1S4DXP3 uncharacterized protein LOC103491636 isoform X2

2.0e-48

96.19

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDFKRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

A0A5D3DEH5 Putative tyrosine phosphatase

2.0e-48

96.19

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLNQLKAGLSALEDAL AGFEDFKRVRTDPDLSNLR LEEFEPLVKRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFK
        LFGFK
Subjt:  LFGFK

A0A6J1K1D9 protein MET1, chloroplastic

5.8e-48

93.4

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Query:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS
        +NAKYEEALEKFESVLGSKPTPDEASV+SYNVACCYSQLN+LKAGLSALEDAL AGFEDFKR+RTDPDLSNLRTLEEFE L+KRFDESFINENAINAIKS
Subjt:  RNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIKS

Query:  LFGFKK
        LFGFKK
Subjt:  LFGFKK

SwissProt top hits

e value

%identity

Alignment

Q94BS2 Protein MET1, chloroplastic

5.4e-43

76.64

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Query:  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIK
        S+N KYEEALE+FESVLGSKPTP+EASV+SYNVACCYS+LNQ++AGLSALE+AL++G+EDFKR+R+DPDL  LR  ++F+PL+K+FDESFINE+AINAIK
Subjt:  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIK

Query:  SLFGFKK
        SLFGF K
Subjt:  SLFGFKK

Arabidopsis top hits

e value

%identity

Alignment

AT1G55480.1 protein containing PDZ domain, a K-box domain, and a TPR region

3.8e-44

76.64

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Query:  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIK
        S+N KYEEALE+FESVLGSKPTP+EASV+SYNVACCYS+LNQ++AGLSALE+AL++G+EDFKR+R+DPDL  LR  ++F+PL+K+FDESFINE+AINAIK
Subjt:  SRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRTDPDLSNLRTLEEFEPLVKRFDESFINENAINAIK

Query:  SLFGFKK
        SLFGF K
Subjt:  SLFGFKK

Sequences

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CDS sequence

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ATGATCTACGCCAAGGACTACGTCTCTACAAGTATGGCTGCATATCCAACTTGTCCTCTCCCTGTATTGTTTACTTTTGAATTGTGCCCACATGAATGTACCAACACCGC
CTATCTTTCTGTTTTTCTTACCTCAAGGAATGCTAAATATGAGGAAGCATTAGAGAAATTCGAGTCAGTGTTGGGATCAAAACCAACTCCAGACGAAGCTTCAGTTTCCA
GTTACAATGTTGCATGCTGTTATTCCCAACTAAATCAGTTAAAAGCTGGGCTATCCGCACTTGAAGACGCCTTGGAAGCAGGATTTGAAGACTTCAAGAGAGTTCGGACG
GATCCTGATCTATCAAACTTAAGGACATTGGAGGAATTTGAGCCTCTTGTGAAAAGGTTTGACGAGTCGTTTATCAACGAGAATGCCATCAATGCCATTAAGTCGCTATT
TGGCTTTAAGAAATAA

mRNA sequence

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Protein sequence

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MIYAKDYVSTSMAAYPTCPLPVLFTFELCPHECTNTAYLSVFLTSRNAKYEEALEKFESVLGSKPTPDEASVSSYNVACCYSQLNQLKAGLSALEDALEAGFEDFKRVRT
DPDLSNLRTLEEFEPLVKRFDESFINENAINAIKSLFGFKK

Spg000590 (gene) of Sponge gourd (cylindrica) v1 genome