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Spg000601 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000601
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTropomyosin
Genome locationscaffold8:44283273..44283584
RNA-Seq ExpressionSpg000601
SyntenySpg000601
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]7.7e-3085Show/hide
Query:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG
        SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Subjt:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]1.7e-2984.26Show/hide
Query:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGE
        MESSK+CFCIPRHKNG KADGGSEKSSKSKPSRRKSRR AKGGKHS SS DSSG+GNTGDA+ SSA AAVAAVAV    T V VDA EDDGGS+HGHGGE
Subjt:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGE

Query:  GGGGGGGD
        GGGGGGGD
Subjt:  GGGGGGGD

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-2986.67Show/hide
Query:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASAS-SAAAVAAVAVTAVTVDAF-EDDGGSTHGHGGEGGG
        MESSK+CFCIPRHKN HK DGGSEKSSKSKPSRRKS  GAK GKHSSSS DSSGNGNTGDASA+ SAAAVAA+AVTAVT+DA  EDDGGSTH HGGEGGG
Subjt:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASAS-SAAAVAAVAVTAVTVDAF-EDDGGSTHGHGGEGGG

Query:  GGGGD
        GGGGD
Subjt:  GGGGD

KAG7035385.1 hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2984.26Show/hide
Query:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGE
        MESSK+CFCIPRHKNG KADGGSEKSSKSKPSRRKSRR AKGGKHS SS DSSG+GNTGDA+ SSA AAVAAVAV    T V VDA EDDGGS+HGHGGE
Subjt:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSA-AAVAAVAV----TAVTVDAFEDDGGSTHGHGGE

Query:  GGGGGGGD
        GGGGGGGD
Subjt:  GGGGGGGD

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]7.7e-3085Show/hide
Query:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG
        SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Subjt:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.6e-2882.18Show/hide
Query:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG
        SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKS R +K GKHSSSS DSSGNGN G+  A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG G GG
Subjt:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG

Query:  D
        D
Subjt:  D

A0A5A7V5U9 Tropomyosin3.7e-3085Show/hide
Query:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG
        SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Subjt:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG

A0A5D3CVK1 Tropomyosin3.7e-3085Show/hide
Query:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG
        SSK+CFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRG+K GKHSS S DSSGNGN+GDA A+SA AVAAVAVTAVT+DA +DDGGSTH HGGEGG GG G
Subjt:  SSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGG

A0A6J1D515 circumsporozoite protein-like6.1e-2577.06Show/hide
Query:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASAS---SAAAVAAVAV---TAVTVDAFEDDGGSTHGHGG
        MES+K+CFCIPRHKNGHKA+GGSEKSSKSKPSRRKSRRG KGGKHSSSS DSSG+GNT   +A+   S AAVAAV V   TA T+DA EDDGGS HGHGG
Subjt:  MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASAS---SAAAVAAVAV---TAVTVDAFEDDGGSTHGHGG

Query:  EGGGGGGGD
         GG GGGGD
Subjt:  EGGGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCAAAGCTTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCG
CCGTGGTGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAAGCAGCGCAGCTGCCGTGGCTGCTGTTGCTG
TCACGGCGGTGACTGTCGATGCCTTTGAAGATGATGGTGGCAGCACGCATGGCCACGGCGGTGAGGGAGGCGGTGGAGGTGGCGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCAAAGCTTTGTTTCTGTATTCCTCGCCATAAAAATGGCCACAAAGCTGATGGAGGATCAGAGAAATCTTCCAAATCAAAGCCTTCCCGCCGCAAATCTCG
CCGTGGTGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAAGCAGCGCAGCTGCCGTGGCTGCTGTTGCTG
TCACGGCGGTGACTGTCGATGCCTTTGAAGATGATGGTGGCAGCACGCATGGCCACGGCGGTGAGGGAGGCGGTGGAGGTGGCGGAGATTAG
Protein sequenceShow/hide protein sequence
MESSKLCFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGAKGGKHSSSSDDSSGNGNTGDASASSAAAVAAVAVTAVTVDAFEDDGGSTHGHGGEGGGGGGGD