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Spg000645 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000645
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold8:38025793..38030461
RNA-Seq ExpressionSpg000645
SyntenySpg000645
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647279.1 hypothetical protein Csa_002929 [Cucumis sativus]6.6e-3351.18Show/hide
Query:  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNT
        +EL DL GLGGD+WI GGD N+TRWSWEKSH + +  N       +A++   D VT DH+P  +   D+ WGPCPFR E SWL    F  L++ WW  N 
Subjt:  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNT

Query:  IQGWPGHGFMMKLKGLKSELRKWNLSQ
        + GWPGHG MMKLK L    R WN +Q
Subjt:  IQGWPGHGFMMKLKGLKSELRKWNLSQ

RVW50795.1 hypothetical protein CK203_076874 [Vitis vinifera]2.9e-2839.68Show/hide
Query:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDN
        R DFW EL DL GL    W +GGDF+V R   +K     +T N     F        L R TSDH P  L    L WGP PFRFEN WL    F+    +
Subjt:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDN

Query:  WWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR
        WW   T++GW GH FM KLK +KS+L+ WN      + +   L+ + L  +D  E    L++D +S R L R ++EDL  +E ++W Q+
Subjt:  WWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR

RVW83303.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.1e-3132.94Show/hide
Query:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNW
        R DFW EL DL GL    W +GGDFNV R   EK     +T N       +     L R TSDH P  L      WGP PFRFEN WL    F+    +W
Subjt:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNW

Query:  WPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLS
        W + T++GW GH FM KLK +KS+L++WN      + +    ++T L  +D  E    L+++ +S R L R+++EDL  +E + W Q+     + +   +
Subjt:  WPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLS

Query:  SMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSF
        S   + ++  +   K  +SL            RG+    + V  E + N  G+ +
Subjt:  SMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSF

TYK17996.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-2953.78Show/hide
Query:  LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRL
        ++ GD+  GPCPFRFENSWL   SF  L++ WW  N + GWP HG MMKLK L+  LR WN +Q     +LPSL++QL+ LD+  +R+ LS++Q+S+  L
Subjt:  LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRL

Query:  LREQIEDLSAQEHIYWHQR
        LREQIE L+AQEHI W  R
Subjt:  LREQIEDLSAQEHIYWHQR

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.8e-3837.18Show/hide
Query:  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR-----------------------------------------NACHNKFGVAHFLRLDRVTS
        FW+EL DL+ L  ++WIL GDFNVTRWSWEKS+GRP+T+                                         N C +K G+    R+ R TS
Subjt:  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR-----------------------------------------NACHNKFGVAHFLRLDRVTS

Query:  DHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPSLVTQLKLLDDTEDRVPLSMD
        DH+P  L FG  +WG  PFRFEN WL   +F+  ++ WW    + GWPGHG MMKLK LK  ++ W     R   +Q   L   +  LDD E   P++ D
Subjt:  DHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPSLVTQLKLLDDTEDRVPLSMD

Query:  QISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ
        Q  +R   +E +  + A+E  +W QRC +  L +
Subjt:  QISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0KDG4 Uncharacterized protein3.7e-2936.79Show/hide
Query:  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNT
        +EL DL GLGGD+WI GGD N+TRWSWEKSH + +  N       +A++   D VT DH+P  +   D+ WGPCPFR E SWL    F  L++ WW  N 
Subjt:  KELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNT

Query:  IQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRC-------GRHTLT-QAV
                                               +L+ LD+  ++  L ++Q+S+ R  REQIE L+ QEHI W QRC       GR  LT   +
Subjt:  IQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRC-------GRHTLT-QAV

Query:  LSSMPIYYLSLF
         S    +Y +LF
Subjt:  LSSMPIYYLSLF

A0A438ET41 Uncharacterized protein1.4e-2839.68Show/hide
Query:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDN
        R DFW EL DL GL    W +GGDF+V R   +K     +T N     F        L R TSDH P  L    L WGP PFRFEN WL    F+    +
Subjt:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLR-LDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDN

Query:  WWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR
        WW   T++GW GH FM KLK +KS+L+ WN      + +   L+ + L  +D  E    L++D +S R L R ++EDL  +E ++W Q+
Subjt:  WWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLV-TQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQR

A0A438HFR2 Transposon TX1 uncharacterized 149 kDa protein3.9e-3132.94Show/hide
Query:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNW
        R DFW EL DL GL    W +GGDFNV R   EK     +T N       +     L R TSDH P  L      WGP PFRFEN WL    F+    +W
Subjt:  RADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTRNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNW

Query:  WPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLS
        W + T++GW GH FM KLK +KS+L++WN      + +    ++T L  +D  E    L+++ +S R L R+++EDL  +E + W Q+     + +   +
Subjt:  WPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPS-LVTQLKLLDDTEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLS

Query:  SMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSF
        S   + ++  +   K  +SL            RG+    + V  E + N  G+ +
Subjt:  SMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSF

A0A5D3D3Q8 Reverse transcriptase4.8e-2953.78Show/hide
Query:  LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRL
        ++ GD+  GPCPFRFENSWL   SF  L++ WW  N + GWP HG MMKLK L+  LR WN +Q     +LPSL++QL+ LD+  +R+ LS++Q+S+  L
Subjt:  LSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDDTEDRVPLSMDQISSRRL

Query:  LREQIEDLSAQEHIYWHQR
        LREQIE L+AQEHI W  R
Subjt:  LREQIEDLSAQEHIYWHQR

A0A6J1E2G6 uncharacterized protein LOC1110254058.7e-3937.18Show/hide
Query:  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR-----------------------------------------NACHNKFGVAHFLRLDRVTS
        FW+EL DL+ L  ++WIL GDFNVTRWSWEKS+GRP+T+                                         N C +K G+    R+ R TS
Subjt:  FWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVTR-----------------------------------------NACHNKFGVAHFLRLDRVTS

Query:  DHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPSLVTQLKLLDDTEDRVPLSMD
        DH+P  L FG  +WG  PFRFEN WL   +F+  ++ WW    + GWPGHG MMKLK LK  ++ W     R   +Q   L   +  LDD E   P++ D
Subjt:  DHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQ-RLSVAQLPSLVTQLKLLDDTEDRVPLSMD

Query:  QISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ
        Q  +R   +E +  + A+E  +W QRC +  L +
Subjt:  QISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQ

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.8e-0452.5Show/hide
Query:  GRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFW
        GR TLT+AVLSSMP++ +S   LP  +   LD+L R F W
Subjt:  GRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFW

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCAAGCGGCGCGAAAACGAAGAAGAAGAAAAATGGAGGCTACCGCGAAAACGAAGAAGAAGAAAAATGGAGGCACTGGCGTGATGGCGTCTGGCGTGAAAATGA
AGAAGAAGGAAAATGGAAGCAGGCGGCGCTAGGGATGTTGAAAAAGACGTTAGAATTTAGTCCTGTAATTTCAAGAGACTATCCAAGACATGCTGATCGTGCGGATTTTT
GGAAGGAACTTCACGACTTGGCTGGTTTAGGTGGTGATAATTGGATTCTTGGAGGAGATTTTAATGTCACACGTTGGTCATGGGAAAAATCTCATGGCCGGCCAGTGACT
AGGAATGCTTGTCACAATAAATTTGGTGTAGCTCATTTTCTTCGCCTTGATAGGGTTACATCGGATCATTACCCTTGTACTCTATCTTTTGGGGATCTCTCTTGGGGCCC
ATGCCCCTTTAGGTTTGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGGTCTTATGGATAATTGGTGGCCTCAAAACACCATTCAGGGATGGCCAGGTCATGGTTTCA
TGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAACGCTTATCTGTTGCACAACTTCCATCTCTAGTTACACAGTTGAAATTGTTGGATGAT
ACAGAAGACAGGGTTCCATTATCTATGGATCAAATATCTTCTAGAAGATTATTAAGGGAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTG
TGGTAGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAAGTAAGGTTGCAAGGTCTCTTGATAAGCTGCTTCGTG
ATTTCTTTTGGGAAGGATCTAGAGGTGATGGTGAATTTGGCCTAGCAGTATTCAAAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTAT
CTTCCCGTATTAAAAGATCTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCAAGCGGCGCGAAAACGAAGAAGAAGAAAAATGGAGGCTACCGCGAAAACGAAGAAGAAGAAAAATGGAGGCACTGGCGTGATGGCGTCTGGCGTGAAAATGA
AGAAGAAGGAAAATGGAAGCAGGCGGCGCTAGGGATGTTGAAAAAGACGTTAGAATTTAGTCCTGTAATTTCAAGAGACTATCCAAGACATGCTGATCGTGCGGATTTTT
GGAAGGAACTTCACGACTTGGCTGGTTTAGGTGGTGATAATTGGATTCTTGGAGGAGATTTTAATGTCACACGTTGGTCATGGGAAAAATCTCATGGCCGGCCAGTGACT
AGGAATGCTTGTCACAATAAATTTGGTGTAGCTCATTTTCTTCGCCTTGATAGGGTTACATCGGATCATTACCCTTGTACTCTATCTTTTGGGGATCTCTCTTGGGGCCC
ATGCCCCTTTAGGTTTGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGGTCTTATGGATAATTGGTGGCCTCAAAACACCATTCAGGGATGGCCAGGTCATGGTTTCA
TGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAACGCTTATCTGTTGCACAACTTCCATCTCTAGTTACACAGTTGAAATTGTTGGATGAT
ACAGAAGACAGGGTTCCATTATCTATGGATCAAATATCTTCTAGAAGATTATTAAGGGAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTG
TGGTAGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGCCAAGTAAGGTTGCAAGGTCTCTTGATAAGCTGCTTCGTG
ATTTCTTTTGGGAAGGATCTAGAGGTGATGGTGAATTTGGCCTAGCAGTATTCAAAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTAT
CTTCCCGTATTAAAAGATCTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATGATTCGTGGTTAA
Protein sequenceShow/hide protein sequence
MEASGAKTKKKKNGGYRENEEEEKWRHWRDGVWRENEEEGKWKQAALGMLKKTLEFSPVISRDYPRHADRADFWKELHDLAGLGGDNWILGGDFNVTRWSWEKSHGRPVT
RNACHNKFGVAHFLRLDRVTSDHYPCTLSFGDLSWGPCPFRFENSWLKIDSFRGLMDNWWPQNTIQGWPGHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVTQLKLLDD
TEDRVPLSMDQISSRRLLREQIEDLSAQEHIYWHQRCGRHTLTQAVLSSMPIYYLSLFKLPSKVARSLDKLLRDFFWEGSRGDGEFGLAVFKEVLTNLLGDSFLLLLTLY
LPVLKDLWVMVLLLHSGMIRG