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Spg000658 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000658
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLA RNA-binding protein
Genome locationscaffold8:47970822..47971248
RNA-Seq ExpressionSpg000658
SyntenySpg000658
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649415.1 hypothetical protein Csa_021682 [Cucumis sativus]3.9e-1797.96Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
KAG6605851.1 La-related protein 1A, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1695.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEKAA AKEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
KAG7035798.1 La-related protein 1A, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1695.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEKAA AKEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
XP_004149652.1 LOW QUALITY PROTEIN: la-related protein 1A [Cucumis sativus]3.9e-1797.96Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
XP_022153849.1 la-related protein 1A [Momordica charantia]1.5e-1695.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPEL+KLLREEYRSLDDFRAKEKAANAKEDG+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
TrEMBL top hitse value%identityAlignment
A0A0A0KWS8 HTH La-type RNA-binding domain-containing protein1.9e-1797.96Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAAN KEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
A0A1S3BNZ3 la-related protein 1A isoform X17.2e-1795.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAA+ KEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
A0A5D3DDZ4 La-related protein 1A isoform X17.2e-1795.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAA+ KEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
A0A6J1DKA7 la-related protein 1A7.2e-1795.92Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPLRKHPEL+KLLREEYRSLDDFRAKEKAANAKEDG+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
A0A6J1H0Y5 la-related protein 1A1.6e-1693.88Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
        AFHHYRRQRDQKEPL+KHPELDKLLREEYRSLDDFRAKEK+A AKEDGN
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN
SwissProt top hitse value%identityAlignment
Q940X9 La-related protein 1A7.0e-0963.83Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
        AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
Arabidopsis top hitse value%identityAlignment
AT5G21160.1 LA RNA-binding protein5.0e-1063.83Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
        AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
AT5G21160.2 LA RNA-binding protein5.0e-1063.83Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
        AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
AT5G21160.3 LA RNA-binding protein5.0e-1063.83Show/hide
Query:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED
        AFHHY   R ++EP+ KHPEL+KLL+EE+RS+DDFRAKE   N KE+
Subjt:  AFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKED

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCATCCCTTGTTGGCCGAGTTTACCAGCTCCAGTCAACACTATCAGTTTTGAGCATCTTGGCTTTCCACCACTATCGAAGACAACGAGATCAGAAAGAGCCCCT
AAGGAAACATCCAGAATTGGACAAGTTACTTAGGGAGGAATACCGTAGCTTGGATGATTTCCGTGCTAAAGAGAAGGCAGCAAATGCAAAAGAGGATGGGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCATCCCTTGTTGGCCGAGTTTACCAGCTCCAGTCAACACTATCAGTTTTGAGCATCTTGGCTTTCCACCACTATCGAAGACAACGAGATCAGAAAGAGCCCCT
AAGGAAACATCCAGAATTGGACAAGTTACTTAGGGAGGAATACCGTAGCTTGGATGATTTCCGTGCTAAAGAGAAGGCAGCAAATGCAAAAGAGGATGGGAATTAG
Protein sequenceShow/hide protein sequence
MLASLVGRVYQLQSTLSVLSILAFHHYRRQRDQKEPLRKHPELDKLLREEYRSLDDFRAKEKAANAKEDGN