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Spg000695 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000695
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:47674818..47676380
RNA-Seq ExpressionSpg000695
SyntenySpg000695
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]2.0e-1034.72Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI
        W PP + R+KLN DA+       GG+G  +RD+ G ++     S      II  +E  A+L G+RA    + DAG      L+V SD L+ I+ ++GS  
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI

Query:  DRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAVT
        + + T+LI  ++   A   D V F FCPR  N +AHS+   +++
Subjt:  DRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAVT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]6.6e-1438.62Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGS
        WKPP +  WKLN +A W+   N GGIGW +RD  G +I A C      RN   I  LE  AI EGLRA R   ++  R    P+ +ESD+LE I  +   
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGS

Query:  TIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV
          D+TE   +  E+  +   ++ VS     R  N +AH L R A+
Subjt:  TIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]8.1e-1234.51Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI
        W PP    WKLN DATW DSL+ GG+GW +RDS G  I A C         +K L     LE           AG      +++ESD LE +  ++ S++
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI

Query:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSLERAA
          TE  LI  ++    + L +  F   P   N +AH + R A
Subjt:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSLERAA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.6e-1535.26Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI
        W+PP    W LNADA+W DS + GGIGW IR   G ++ AG N      + +K LE  AILEGLR    +      G++ PL +E+D+ E    ++    
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI

Query:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSL-ERAAVTHGNFVYSCSLP
        D T+T  +  E+ ++ D  ++ +F    R  N  AHSL +RA+V   + ++    P
Subjt:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSL-ERAAVTHGNFVYSCSLP

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.3e-1438.51Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRK-----IIEDAGRGIVFPLDVESDALEFIKAV
        WKPP +  WKLN DA W+   N GGIGW +RD  G +I A C    R    I  LE  AI EGLRA R+     I ++  R    P+ +ESD+LE I  +
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRK-----IIEDAGRGIVFPLDVESDALEFIKAV

Query:  SGSTIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV
             D+TE   +  E+  + + +  VS     R  N +AH L R A+
Subjt:  SGSTIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134123.2e-1438.62Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGS
        WKPP +  WKLN +A W+   N GGIGW +RD  G +I A C      RN   I  LE  AI EGLRA R   ++  R    P+ +ESD+LE I  +   
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGS

Query:  TIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV
          D+TE   +  E+  +   ++ VS     R  N +AH L R A+
Subjt:  TIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV

A0A6J1D4B6 uncharacterized protein LOC1110171813.9e-1234.51Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI
        W PP    WKLN DATW DSL+ GG+GW +RDS G  I A C         +K L     LE           AG      +++ESD LE +  ++ S++
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI

Query:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSLERAA
          TE  LI  ++    + L +  F   P   N +AH + R A
Subjt:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSLERAA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X16.2e-1043.43Show/hide
Query:  SSHSPWKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFI
        ++ + WKPP +  WKLN DA W+   N  GIGW +RD  G +I  GC      RN   I  LE  AI EGLRA R   ++  R    P+ +ESD+LE I
Subjt:  SSHSPWKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCN--SEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFI

A0A6J1DNV9 uncharacterized protein LOC1110224032.2e-1535.26Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI
        W+PP    W LNADA+W DS + GGIGW IR   G ++ AG N      + +K LE  AILEGLR    +      G++ PL +E+D+ E    ++    
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGSTI

Query:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSL-ERAAVTHGNFVYSCSLP
        D T+T  +  E+ ++ D  ++ +F    R  N  AHSL +RA+V   + ++    P
Subjt:  DRTETKLIAREVKDVADGLDV-SFDFCPRNNNALAHSL-ERAAVTHGNFVYSCSLP

A0A6J1DSV1 uncharacterized protein LOC1110236081.1e-1438.51Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRK-----IIEDAGRGIVFPLDVESDALEFIKAV
        WKPP +  WKLN DA W+   N GGIGW +RD  G +I A C    R    I  LE  AI EGLRA R+     I ++  R    P+ +ESD+LE I  +
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRK-----IIEDAGRGIVFPLDVESDALEFIKAV

Query:  SGSTIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV
             D+TE   +  E+  + + +  VS     R  N +AH L R A+
Subjt:  SGSTIDRTETKLIAREVKDVADGLD-VSFDFCPRNNNALAHSLERAAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.5e-0827.63Show/hide
Query:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLR-AYRKIIEDAGRGIVFPLDVESDALEFIKAVSGST
        WK P     K N DATW+      GIGW +R+ +G ++  G  + PR  +++     +A LE LR A   +     + I+F    ESDA   +  ++   
Subjt:  WKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLR-AYRKIIEDAGRGIVFPLDVESDALEFIKAVSGST

Query:  IDRTETKLIAREVKDVADGL----DVSFDFCPRNNNALAHSLERAAVTHGNF
           T    +   ++D+   L    +V F+F PR  N +A  + R +++  N+
Subjt:  IDRTETKLIAREVKDVADGL----DVSFDFCPRNNNALAHSLERAAVTHGNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGCTTAAGGAACCGGTCGAGTCACTCTCCTTGGAAGCCGCCGATAGCAGGTCGCTGGAAGCTCAATGCAGACGCAACCTGGAAGGATTCTCTCAATTTAGGCGG
GATTGGTTGGGCCATTCGTGACTCTACGGGTTCTCTAATTAGTGCTGGATGCAATTCGGAACCGAGGAATTGGTCAATAATAAAAAATTTAGAAGGTAAAGCCATCCTTG
AAGGTTTGAGAGCTTACCGAAAAATCATTGAAGATGCGGGTAGAGGAATCGTTTTTCCCCTCGACGTCGAATCAGATGCTTTGGAGTTCATCAAAGCAGTCTCAGGATCC
ACGATAGATCGTACCGAGACGAAATTGATCGCGAGAGAGGTGAAGGATGTAGCTGATGGTTTGGATGTTTCTTTCGATTTTTGTCCAAGAAACAACAATGCTCTCGCCCA
TTCCTTAGAGCGAGCAGCTGTTACTCACGGGAATTTTGTGTATTCTTGTTCTTTACCCTTTTTAGGCTTGTTAGATGGGGCTTTTTTTGAGAGGGATGATAGGATCCCCG
TTTGGTTCTTTAATGTGGTGGTTGAAAACTTTGTTGGTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGCTTAAGGAACCGGTCGAGTCACTCTCCTTGGAAGCCGCCGATAGCAGGTCGCTGGAAGCTCAATGCAGACGCAACCTGGAAGGATTCTCTCAATTTAGGCGG
GATTGGTTGGGCCATTCGTGACTCTACGGGTTCTCTAATTAGTGCTGGATGCAATTCGGAACCGAGGAATTGGTCAATAATAAAAAATTTAGAAGGTAAAGCCATCCTTG
AAGGTTTGAGAGCTTACCGAAAAATCATTGAAGATGCGGGTAGAGGAATCGTTTTTCCCCTCGACGTCGAATCAGATGCTTTGGAGTTCATCAAAGCAGTCTCAGGATCC
ACGATAGATCGTACCGAGACGAAATTGATCGCGAGAGAGGTGAAGGATGTAGCTGATGGTTTGGATGTTTCTTTCGATTTTTGTCCAAGAAACAACAATGCTCTCGCCCA
TTCCTTAGAGCGAGCAGCTGTTACTCACGGGAATTTTGTGTATTCTTGTTCTTTACCCTTTTTAGGCTTGTTAGATGGGGCTTTTTTTGAGAGGGATGATAGGATCCCCG
TTTGGTTCTTTAATGTGGTGGTTGAAAACTTTGTTGGTGGTTAG
Protein sequenceShow/hide protein sequence
MRSLRNRSSHSPWKPPIAGRWKLNADATWKDSLNLGGIGWAIRDSTGSLISAGCNSEPRNWSIIKNLEGKAILEGLRAYRKIIEDAGRGIVFPLDVESDALEFIKAVSGS
TIDRTETKLIAREVKDVADGLDVSFDFCPRNNNALAHSLERAAVTHGNFVYSCSLPFLGLLDGAFFERDDRIPVWFFNVVVENFVGG