; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg000805 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000805
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:43945195..43945818
RNA-Seq ExpressionSpg000805
SyntenySpg000805
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.8e-1532.26Show/hide
Query:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSA
        +L  +RR    +  +W+PP  N WKLN +A+W + +NTGG+GWI+RD  G +I+A C+ I     I  LE  AI EG+ +           P+ +ES+S 
Subjt:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSA

Query:  AVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK
          I  L+ + +D++E+      I ++       +    +R  N  AH LAR  ++
Subjt:  AVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.4e-1335.43Show/hide
Query:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP
        T +  K  +  P+RR    +  +W+PP  N WKLN DA+W + +NT G+GWI+RD  G +I+ GC+ I     I  LE  AI EG+ +           P
Subjt:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP

Query:  LVIESNSAAVIMALNGEREDRSELSIF
        + +ES+S   I  L+  R  + +L +F
Subjt:  LVIESNSAAVIMALNGEREDRSELSIF

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]3.4e-1335.43Show/hide
Query:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP
        T +  K  +  P+RR    +  +W+PP  N WKLN DA+W + +NT G+GWI+RD  G +I+ GC+ I     I  LE  AI EG+ +           P
Subjt:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP

Query:  LVIESNSAAVIMALNGEREDRSELSIF
        + +ES+S   I  L+  R  + +L +F
Subjt:  LVIESNSAAVIMALNGEREDRSELSIF

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.4e-1941.22Show/hide
Query:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRS
        KW PP ++ W LNADASW   ++ GG+GWIIR  +G ++ AG + +     +K+LEA AILEG+    N T      PL IE++SA V   LN +RED +
Subjt:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRS

Query:  ELSIFTNAILELAPSASAANFAKCNRTENLGAHNLA-RMGVKMGDFFW
        +       IL L  S     FAK  R  N  AH+LA R  V      W
Subjt:  ELSIFTNAILELAPSASAANFAKCNRTENLGAHNLA-RMGVKMGDFFW

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]7.4e-1632.08Show/hide
Query:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGM----ESYLNNTGSAFKPPLVIE
        +L  +RR    +  +W+PP  N WKLN DA+W + +NTGG+GWI+RD  G +I+A C+ I     I  LE  AI EG+    + +          P+ +E
Subjt:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGM----ESYLNNTGSAFKPPLVIE

Query:  SNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK
        S+S   I  L+ + +D++E+      I ++       +    +R  N  AH+LAR  ++
Subjt:  SNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.4e-1532.26Show/hide
Query:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSA
        +L  +RR    +  +W+PP  N WKLN +A+W + +NTGG+GWI+RD  G +I+A C+ I     I  LE  AI EG+ +           P+ +ES+S 
Subjt:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSA

Query:  AVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK
          I  L+ + +D++E+      I ++       +    +R  N  AH LAR  ++
Subjt:  AVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.7e-1335.43Show/hide
Query:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP
        T +  K  +  P+RR    +  +W+PP  N WKLN DA+W + +NT G+GWI+RD  G +I+ GC+ I     I  LE  AI EG+ +           P
Subjt:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP

Query:  LVIESNSAAVIMALNGEREDRSELSIF
        + +ES+S   I  L+  R  + +L +F
Subjt:  LVIESNSAAVIMALNGEREDRSELSIF

A0A6J1DNV9 uncharacterized protein LOC1110224034.5e-1941.22Show/hide
Query:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRS
        KW PP ++ W LNADASW   ++ GG+GWIIR  +G ++ AG + +     +K+LEA AILEG+    N T      PL IE++SA V   LN +RED +
Subjt:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRS

Query:  ELSIFTNAILELAPSASAANFAKCNRTENLGAHNLA-RMGVKMGDFFW
        +       IL L  S     FAK  R  N  AH+LA R  V      W
Subjt:  ELSIFTNAILELAPSASAANFAKCNRTENLGAHNLA-RMGVKMGDFFW

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.7e-1335.43Show/hide
Query:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP
        T +  K  +  P+RR    +  +W+PP  N WKLN DA+W + +NT G+GWI+RD  G +I+ GC+ I     I  LE  AI EG+ +           P
Subjt:  TQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPP

Query:  LVIESNSAAVIMALNGEREDRSELSIF
        + +ES+S   I  L+  R  + +L +F
Subjt:  LVIESNSAAVIMALNGEREDRSELSIF

A0A6J1DSV1 uncharacterized protein LOC1110236083.6e-1632.08Show/hide
Query:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGM----ESYLNNTGSAFKPPLVIE
        +L  +RR    +  +W+PP  N WKLN DA+W + +NTGG+GWI+RD  G +I+A C+ I     I  LE  AI EG+    + +          P+ +E
Subjt:  NLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGM----ESYLNNTGSAFKPPLVIE

Query:  SNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK
        S+S   I  L+ + +D++E+      I ++       +    +R  N  AH+LAR  ++
Subjt:  SNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-0536.36Show/hide
Query:  YTQIN-IKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAG
        YT+ N + Q N R        +H++WR P+  + K N D S+ +       GW++RDSNGS + AG
Subjt:  YTQIN-IKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAG

AT1G52990.1 thioredoxin family protein7.4e-0625.19Show/hide
Query:  KLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRSELSIFTNAIL
        K N DAS        G+GW+IR+S G+++E G  +       +  E  A++  +++      SAF    VI     + +  L   + D   L  + + I 
Subjt:  KLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGEREDRSELSIFTNAIL

Query:  ELAPSASAANFAKCNRTENLGAHNLARMGVK
           PS ++  F   +R +N  A  L +  +K
Subjt:  ELAPSASAANFAKCNRTENLGAHNLARMGVK

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)1.1e-0631.71Show/hide
Query:  KQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGME
        +Q N RP  R      ++W PP   + K N D+ +    +     WIIRDSNG +I +GC ++ Q+++    EA   L  ++
Subjt:  KQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGME

AT4G29090.1 Ribonuclease H-like superfamily protein1.7e-0528.42Show/hide
Query:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGE
        +WRPP   + K N DA+W   +   G+GW++R+  G +   G + + +     +LEA+  LE M   + +        ++ ES+S  +I  LN +
Subjt:  KWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVIESNSAAVIMALNGE

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-0825.15Show/hide
Query:  YLYYTQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSA
        +L  T  N +QN     R      + KW PP  +  K N DAS   ++   G+GWI+R+S G++IE G  +       +  E   ++  +++   + G  
Subjt:  YLYYTQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSA

Query:  FKPPLVIESNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK
         K  ++ E ++  +   +N  +     L  F + I    PS  +  F+  +R +N  A  LA+  +K
Subjt:  FKPPLVIESNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTCTATCTATATTACACACAAATCAATATCAAACAAAATAACCTGCGGCCAGTGAGGAGGGAGAGCCACCTGAGTCACGAGAAATGGAGGCCACCGAAGATCAA
CTTCTGGAAACTTAATGCAGACGCTTCGTGGTGCTCGAAGTCCAACACGGGCGGTGTGGGGTGGATTATTCGTGACTCAAATGGATCTCTGATCGAAGCCGGTTGCAAGC
GAATCAGCCAAAATTGGGCAATTAAAATCCTTGAAGCGAAAGCTATTCTAGAGGGGATGGAATCGTACCTAAACAACACTGGCTCCGCTTTCAAACCCCCGCTGGTGATA
GAATCAAACTCTGCCGCGGTGATTATGGCCCTCAATGGGGAGAGGGAGGATCGGTCGGAACTGTCCATCTTCACCAACGCCATTCTAGAGCTGGCTCCTTCAGCCAGCGC
TGCTAATTTTGCTAAATGTAATCGAACGGAAAATCTTGGGGCTCACAATCTTGCTCGTATGGGAGTCAAAATGGGGGACTTTTTTTGGTCTGGGCGCAGCTTGTTCCCAG
AAATTGTTCATTTGATTTTTTGGAGGGAGGAGAATCTCCCCCCGGTTGTTGGCGAGTTAGTTGAGCTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTCTATCTATATTACACACAAATCAATATCAAACAAAATAACCTGCGGCCAGTGAGGAGGGAGAGCCACCTGAGTCACGAGAAATGGAGGCCACCGAAGATCAA
CTTCTGGAAACTTAATGCAGACGCTTCGTGGTGCTCGAAGTCCAACACGGGCGGTGTGGGGTGGATTATTCGTGACTCAAATGGATCTCTGATCGAAGCCGGTTGCAAGC
GAATCAGCCAAAATTGGGCAATTAAAATCCTTGAAGCGAAAGCTATTCTAGAGGGGATGGAATCGTACCTAAACAACACTGGCTCCGCTTTCAAACCCCCGCTGGTGATA
GAATCAAACTCTGCCGCGGTGATTATGGCCCTCAATGGGGAGAGGGAGGATCGGTCGGAACTGTCCATCTTCACCAACGCCATTCTAGAGCTGGCTCCTTCAGCCAGCGC
TGCTAATTTTGCTAAATGTAATCGAACGGAAAATCTTGGGGCTCACAATCTTGCTCGTATGGGAGTCAAAATGGGGGACTTTTTTTGGTCTGGGCGCAGCTTGTTCCCAG
AAATTGTTCATTTGATTTTTTGGAGGGAGGAGAATCTCCCCCCGGTTGTTGGCGAGTTAGTTGAGCTCGTTTAA
Protein sequenceShow/hide protein sequence
MVVYLYYTQINIKQNNLRPVRRESHLSHEKWRPPKINFWKLNADASWCSKSNTGGVGWIIRDSNGSLIEAGCKRISQNWAIKILEAKAILEGMESYLNNTGSAFKPPLVI
ESNSAAVIMALNGEREDRSELSIFTNAILELAPSASAANFAKCNRTENLGAHNLARMGVKMGDFFWSGRSLFPEIVHLIFWREENLPPVVGELVELV