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Spg000846 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000846
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:37257942..37258732
RNA-Seq ExpressionSpg000846
SyntenySpg000846
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB20572.1 hypothetical protein B456_003G154500 [Gossypium raimondii]4.8e-0523.04Show/hide
Query:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAE--
        W++EN  ++   + V+ +W IW  RN+F+ ++        Q   +I   I+ F    R+   +++ P+    RS   W+PPP   +KIN DA  + A   
Subjt:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAE--

Query:  -VLNMTERP----------------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVAN
         VL    R                                      ++ES+   ++ N+ K  E+ +E +     +  LA+      FQ   R  N  A+
Subjt:  -VLNMTERP----------------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVAN

Query:  ALARKGAGLSRHLGFFV
        AL  +  G  R L F +
Subjt:  ALARKGAGLSRHLGFFV

XP_015385737.1 uncharacterized protein LOC107177033 [Citrus sinensis]1.6e-0520.67Show/hide
Query:  MIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWN------
        M +  ++S++EV V + W IW  +N+F+ +  K + ++    S++   ++ +    R   + +E   + + ++Q +W+PPP + +K+N DA+ N      
Subjt:  MIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWN------

Query:  ---------------------------------AAE---VLNMTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQN
                                         A E   V+  +   Q  ++ES+C  +++ +N  + + TE+   +  I  L+++   + + H PR  N
Subjt:  ---------------------------------AAE---VLNMTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQN

Query:  RVANALAR
          A++LA+
Subjt:  RVANALAR

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.9e-0730.36Show/hide
Query:  DSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPR------------SQNLRSQAL-WNPPPH
        DSW W++   S+ E+  ++++ W IW  RNR I   ++ +++ +Q   Q+ RSI  F  +N      + + R             +NL    + W+ PP 
Subjt:  DSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPR------------SQNLRSQAL-WNPPPH

Query:  SCWKINSDASWN
        +CWK+N+DASW+
Subjt:  SCWKINSDASWN

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]4.2e-0926.89Show/hide
Query:  MDSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRS-----IQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINS
        MD + W+  +  + + +  +++LW+IW  RN+ +       S ++Q  SQ  R+     I EFT  N   ++ +E+   +NL     W PP    WK+N 
Subjt:  MDSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRS-----IQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINS

Query:  DASWN--------------------AAEVLN------MTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANA
        DA+W                      AE L         E      +ES+CL ++  +NK    LTE+ + VE I K  ++  +  F+H P   N VA+ 
Subjt:  DASWN--------------------AAEVLN------MTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANA

Query:  LARKGAGLSRHL
        +AR+      H+
Subjt:  LARKGAGLSRHL

XP_030936218.1 uncharacterized protein LOC115961366 [Quercus lobata]4.3e-0625.23Show/hide
Query:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASW------
        W+I N    + EV  ++ W IW  RNR +R    ADS+      QI +  + +     A  + V  P  QN  ++  W PPP   +KIN D +       
Subjt:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASW------

Query:  ---------NAAEVLNMTERP---------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQ
                 +   V+    +P                           +  V+E + L++I+ L  E+  LT + + +E   +L+Q+   LH+ H  R  
Subjt:  ---------NAAEVLNMTERP---------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQ

Query:  NRVANALARKGAGL
        N +A+ LAR  AG+
Subjt:  NRVANALARKGAGL

TrEMBL top hitse value%identityAlignment
A0A0D2MPE5 RNase H domain-containing protein2.3e-0523.04Show/hide
Query:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAE--
        W++EN  ++   + V+ +W IW  RN+F+ ++        Q   +I   I+ F    R+   +++ P+    RS   W+PPP   +KIN DA  + A   
Subjt:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAE--

Query:  -VLNMTERP----------------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVAN
         VL    R                                      ++ES+   ++ N+ K  E+ +E +     +  LA+      FQ   R  N  A+
Subjt:  -VLNMTERP----------------------------------QSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVAN

Query:  ALARKGAGLSRHLGFFV
        AL  +  G  R L F +
Subjt:  ALARKGAGLSRHLGFFV

A0A5B6V8K6 Cinnamoyl-CoA reductase 1-like7.4e-0422.77Show/hide
Query:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWN-----
        +++E  S S+++  V  +W +W+ RN+ + +                   +E  R NR  HV        N+ +   W PP     KIN DA++      
Subjt:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWN-----

Query:  -------------------AAEVLNMTERPQSFV---------IESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANALAR
                           + + L+   R    V         IE + L +IR L  E+E+ +E++  +    KL  N     F+H  R +N+VA+ L +
Subjt:  -------------------AAEVLNMTERPQSFV---------IESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANALAR

Query:  KG
        +G
Subjt:  KG

A0A6J1CQG0 uncharacterized protein LOC1110132161.9e-0730.36Show/hide
Query:  DSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPR------------SQNLRSQAL-WNPPPH
        DSW W++   S+ E+  ++++ W IW  RNR I   ++ +++ +Q   Q+ RSI  F  +N      + + R             +NL    + W+ PP 
Subjt:  DSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPR------------SQNLRSQAL-WNPPPH

Query:  SCWKINSDASWN
        +CWK+N+DASW+
Subjt:  SCWKINSDASWN

A0A6J1D4B6 uncharacterized protein LOC1110171812.0e-0926.89Show/hide
Query:  MDSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRS-----IQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINS
        MD + W+  +  + + +  +++LW+IW  RN+ +       S ++Q  SQ  R+     I EFT  N   ++ +E+   +NL     W PP    WK+N 
Subjt:  MDSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRS-----IQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINS

Query:  DASWN--------------------AAEVLN------MTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANA
        DA+W                      AE L         E      +ES+CL ++  +NK    LTE+ + VE I K  ++  +  F+H P   N VA+ 
Subjt:  DASWN--------------------AAEVLN------MTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANA

Query:  LARKGAGLSRHL
        +AR+      H+
Subjt:  LARKGAGLSRHL

A0A7J9DH89 RNase H domain-containing protein7.4e-0428.06Show/hide
Query:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAEVL
        W++EN  ++   V V+ +W IW  RN+F+ ++ K  S+ + I    S  ++        Y  + E  +    RS   W+PPP    KIN DA      +L
Subjt:  WMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAEVL

Query:  NMTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAI
           +R  S  I  N    I     +  NL    V  EA+
Subjt:  NMTERPQSFVIESNCLNLIRNLNKEDENLTELKVCVEAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATGGTGTTGGATGATCGAGAACTTTTCAGAAAGTGAGATGGAAGTTGCTGTGATCGTTTTGTGGAATATTTGGGCGTTGCGCAACAGGTTTATCAGAGACAA
ATACAAAGCAGACTCAATGATGGACCAGATTTTCAGCCAAATCAGCAGAAGCATTCAAGAATTTACAAGAAATAATCGTGCTTACCATGTCGCAGTTGAAGAGCCGAGAA
GTCAGAACCTCCGGAGTCAGGCCCTTTGGAATCCCCCTCCTCATTCGTGCTGGAAGATCAATTCAGACGCCTCCTGGAATGCAGCGGAAGTGCTCAATATGACGGAAAGA
CCGCAAAGCTTTGTGATTGAGTCCAATTGCCTGAATCTAATCAGAAATCTCAACAAAGAAGATGAGAATCTTACCGAATTGAAGGTCTGTGTTGAAGCCATTCTCAAATT
GGCTCAAAATCAGGGAGTGCTCCATTTTCAGCATTGCCCTAGGTTGCAGAACAGAGTGGCGAACGCCCTTGCTCGTAAGGGTGCTGGTCTCAGTCGCCATCTGGGTTTTT
TTGTTGAAGATCGGGGTCTCCTTCCACGCTGGAAGGTTGTGCCCGCTTTTGGCCCCCTGATCTTCCGTTTTTTCGCGCCTCGCTTGTTCGCGAGGATGCTCTGTATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCATGGTGTTGGATGATCGAGAACTTTTCAGAAAGTGAGATGGAAGTTGCTGTGATCGTTTTGTGGAATATTTGGGCGTTGCGCAACAGGTTTATCAGAGACAA
ATACAAAGCAGACTCAATGATGGACCAGATTTTCAGCCAAATCAGCAGAAGCATTCAAGAATTTACAAGAAATAATCGTGCTTACCATGTCGCAGTTGAAGAGCCGAGAA
GTCAGAACCTCCGGAGTCAGGCCCTTTGGAATCCCCCTCCTCATTCGTGCTGGAAGATCAATTCAGACGCCTCCTGGAATGCAGCGGAAGTGCTCAATATGACGGAAAGA
CCGCAAAGCTTTGTGATTGAGTCCAATTGCCTGAATCTAATCAGAAATCTCAACAAAGAAGATGAGAATCTTACCGAATTGAAGGTCTGTGTTGAAGCCATTCTCAAATT
GGCTCAAAATCAGGGAGTGCTCCATTTTCAGCATTGCCCTAGGTTGCAGAACAGAGTGGCGAACGCCCTTGCTCGTAAGGGTGCTGGTCTCAGTCGCCATCTGGGTTTTT
TTGTTGAAGATCGGGGTCTCCTTCCACGCTGGAAGGTTGTGCCCGCTTTTGGCCCCCTGATCTTCCGTTTTTTCGCGCCTCGCTTGTTCGCGAGGATGCTCTGTATATGA
Protein sequenceShow/hide protein sequence
MDSWCWMIENFSESEMEVAVIVLWNIWALRNRFIRDKYKADSMMDQIFSQISRSIQEFTRNNRAYHVAVEEPRSQNLRSQALWNPPPHSCWKINSDASWNAAEVLNMTER
PQSFVIESNCLNLIRNLNKEDENLTELKVCVEAILKLAQNQGVLHFQHCPRLQNRVANALARKGAGLSRHLGFFVEDRGLLPRWKVVPAFGPLIFRFFAPRLFARMLCI