CuGenDBv2

Gene ID	Spg000862
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mitochondrial 28S Ribosomal protein
Genome location	scaffold8:44243255..44245439
RNA-Seq Expression	Spg000862
Synteny	Spg000862
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR032053 - Mitochondrial 28S ribosomal protein S34

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]

3.5e-60

88.89

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AISRALDFSR SSSF+R+FS+SSPSTSSSNPNAS  SS+ KRRKKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP S E
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE

XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]

6.6e-59

85.93

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AISRALDFSR SSSF+R+F++SSPSTSSSNPNAS +SS+ KRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE
        IAHK+G PI EAPKKISGVHKRCWKYIASLP+  E
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]

2.5e-58

85.29

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR  ISRALDFSR +SSF+R+FSTS+ STSSS+P+ASAA+SKNKRRKKKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH
        IAHK+G PIAEAPKKISGVHKRCWKYI SL +SSE+
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]

8.6e-59

85.29

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR  ISRALDFSR +SSF+R+FSTS+ STSSS+P+ASAA+SKNKRRKKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH
        IAHK+G PIAEAPKKISGVHKRCWKYI SLP+SSE+
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]

4.4e-63

91.85

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Query:  VANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIA
        VANR AISRALDFSR SS+F+R+FSTSSPSTSSSNPNAS AS+KNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWGIA
Subjt:  VANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIA

Query:  HKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEHN
        HKDGTPIAEAPKKISGVHKRCWKYIASLP+S E N
Subjt:  HKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEHN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KH76 Uncharacterized protein

1.7e-60

88.89

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AISRALDFSR SSSF+R+FS+SSPSTSSSNPNAS  SS+ KRRKKKKNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE
        IAHK+GTPI EAPKKISGVHKRCWKYIASLP S E
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE

A0A1S3CKN2 uncharacterized protein LOC103502049

3.2e-59

85.93

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AISRALDFSR SSSF+R+F++SSPSTSSSNPNAS +SS+ KRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE
        IAHK+G PI EAPKKISGVHKRCWKYIASLP+  E
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE

A0A5A7V0Y6 Uncharacterized protein

3.2e-59

85.93

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AISRALDFSR SSSF+R+F++SSPSTSSSNPNAS +SS+ KRRKKKKNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE
        IAHK+G PI EAPKKISGVHKRCWKYIASLP+  E
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSE

A0A6J1G714 uncharacterized protein LOC111451448

2.1e-58

84.56

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR  ISRALDFSR +SSF+R+FSTS+ STSSS+P+ASAA+SKNKRRKKKKNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH
        IAHK+G PIAEAPKKISGVHKRCWKYI SLP+S E+
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH

A0A6J1KZ28 uncharacterized protein LOC111500023

1.2e-58

85.29

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Query:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR  ISRALDFSR +SSF+R+FSTS+ STSSS+P+ASAA+SKNKRRKKKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG
Subjt:  MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH
        IAHK+G PIAEAPKKISGVHKRCWKYI SL +SSE+
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSSEH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G52370.1 unknown protein

6.2e-39

63.97

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Query:  MSVANRAAISR--ALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA
        M++ NR AISR   +   R S + LR+FS +  S      N S+ SSK KRR KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKA
Subjt:  MSVANRAAISR--ALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA

Query:  WGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSS
        WGI HKDG   AEAPKKISGVHKRCWKYI +L K++
Subjt:  WGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSS

AT5G58990.1 unknown protein

1.6e-39

62.77

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Query:  MSVANRAAISRALDFSRF--SSSFLRSFSTSSPSTSSSNPNASAASSKNK-RRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGK
        M++ NR AISR      F  S S LR+FS ++PS +S+  + + +S  NK +R+KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGK
Subjt:  MSVANRAAISRALDFSRF--SSSFLRSFSTSSPSTSSSNPNASAASSKNK-RRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGK

Query:  AWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSS
        AWGI HKDG   AEAPKKISGVHKRCWKYI +L K++
Subjt:  AWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPKSS

Sequences

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CDS sequence

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ATGTCTGTCGCCAACAGAGCTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTAGCTTTCTCAGAAGCTTCAGCACTTCTTCGCCGTCAACCTCTTCTTCGAA
CCCCAATGCCTCGGCTGCTTCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACTTGTTCGAAGTAGTTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCA
AGGCTCACTGGGATGAAATATCATATCAGATCACCAAAATCAATCTGTACAAGAGTGGCACGCACGGAAAGGCATGGGGCATCGCTCATAAAGATGGCACTCCCATTGCA
GAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATTGCAAGTTTGCCAAAATCATCAGAGCACAACGAGGACGAAATTGATAGAAAGCAACCCAT
CAGCTGA

mRNA sequence

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Protein sequence

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MSVANRAAISRALDFSRFSSSFLRSFSTSSPSTSSSNPNASAASSKNKRRKKKKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGIAHKDGTPIA
EAPKKISGVHKRCWKYIASLPKSSEHNEDEIDRKQPIS

Spg000862 (gene) of Sponge gourd (cylindrica) v1 genome