CuGenDBv2

Gene ID	Spg000877
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ABC transporter E family member 2
Genome location	scaffold8:44069838..44074312
RNA-Seq Expression	Spg000877
Synteny	Spg000877
Gene Ontology terms	GO:0000054 - ribosomal subunit export from nucleus (biological process) GO:0006413 - translational initiation (biological process) GO:0006415 - translational termination (biological process) GO:0016020 - membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0043024 - ribosomal small subunit binding (molecular function) GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domains	IPR013283 - RLI1 IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8677519.1 ATP-binding cassette sub-family E member 1 [Hibiscus syriacus]

6.0e-35

78.76

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL        ++IIKPQYVDH P AVQGN GQVL+QKDER+MK EL  D ELNQVIDRNVGDLSG E
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE

Query:  LQRFAFVVVAIQN
        LQRFA  VVAIQN
Subjt:  LQRFAFVVVAIQN

KAF3454206.1 hypothetical protein FNV43_RR04653 [Rhamnella rubrinervis]

1.3e-34

68.84

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVL+QKDER+M
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        KEEL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

KAF8745531.1 hypothetical protein HU200_013432 [Digitaria exilis]

7.8e-35

78.76

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL         +IIKPQYVDH P AVQGN GQVLEQKDER+MK EL  D ELNQVIDRNVGDLSG E
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE

Query:  LQRFAFVVVAIQN
        LQRFA  VVA+QN
Subjt:  LQRFAFVVVAIQN

XP_008444234.1 PREDICTED: ABC transporter E family member 2 [Cucumis melo]

1.3e-34

68.84

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDER+M
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K+EL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

XP_022140520.1 ABC transporter E family member 2 [Momordica charantia]

1.6e-35

70.29

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDERNM
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        KEEL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWQ2 Uncharacterized protein

6.5e-35

68.84

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDER+M
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K+EL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

A0A1S3B9F5 ABC transporter E family member 2

6.5e-35

68.84

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDER+M
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K+EL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

A0A5A7U919 ABC transporter E family member 2

6.5e-35

68.84

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDER+M
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K+EL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

A0A6A2YHV5 ATP-binding cassette sub-family E member 1

2.9e-35

78.76

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL        ++IIKPQYVDH P AVQGN GQVL+QKDER+MK EL  D ELNQVIDRNVGDLSG E
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEELYHDRELNQVIDRNVGDLSGLE

Query:  LQRFAFVVVAIQN
        LQRFA  VVAIQN
Subjt:  LQRFAFVVVAIQN

A0A6J1CFA7 ABC transporter E family member 2

7.6e-36

70.29

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALKVLAGKLKPNL                         TRIL     +IIKPQYVDH P AVQGN GQVLEQKDERNM
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        KEEL HD ELNQVIDRNVGDLSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

SwissProt top hits

e value

%identity

Alignment

P61221 ATP-binding cassette sub-family E member 1

6.7e-21

48.18

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LP+PR  +VLGLVGTNGIGKSTALK+LAGK KPNL                         T+IL     +IIKPQYVD  P A +G  G +L++KDE   
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ
        +  +    +L  + +RNV DLSG ELQRFA  VV IQ
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ

P61222 ATP-binding cassette sub-family E member 1

6.7e-21

48.18

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LP+PR  +VLGLVGTNGIGKSTALK+LAGK KPNL                         T+IL     +IIKPQYVD  P A +G  G +L++KDE   
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ
        +  +    +L  + +RNV DLSG ELQRFA  VV IQ
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ

Q8LPJ4 ABC transporter E family member 2

6.4e-32

62.32

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALK+LAGKLKPNL                         TRIL     +IIKPQYVDH P AV+GN G+VL+QKDER+ 
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K EL  D ELNQVIDR+V +LSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

Q9LID6 ABC transporter E family member 1

3.5e-22

46.72

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL-------------------------VTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LP+PR  QVLGLVGTNGIGKSTALK+LAGKLKPNL                         +  +     + IKPQ+VD+    V+GN G++LE+ DER +
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL-------------------------VTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ
         EE+  D ELNQV++R    +SG ELQRFA   V ++
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ

Q9VSS1 Protein Pixie

2.3e-21

45.65

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LP+PR  +VLGLVG NGIGKSTALK+LAGK KPNL                         T+IL     +++KPQYVD  P AV+G  G +L++KDER +
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        + ++    +L+ + DR +  LSG ELQRFA  +V IQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

Arabidopsis top hits

e value

%identity

Alignment

AT2G31970.1 DNA repair-recombination protein (RAD50)

3.8e-19

65.22

Show/hide

Query:  YNIADGMRQMFDPFERVARAHHVCSCCERPFTAEEEDEFVKKQRVKAASSAEHMKVPAVESSSYLDKVF
        YN+A+GMRQMF+PFE+ AR  H C CCER FTA+EE  F+KKQRVKA+S+ EH+K  AVESS+  D VF
Subjt:  YNIADGMRQMFDPFERVARAHHVCSCCERPFTAEEEDEFVKKQRVKAASSAEHMKVPAVESSSYLDKVF

AT3G13640.1 RNAse l inhibitor protein 1

2.5e-23

46.72

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL-------------------------VTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LP+PR  QVLGLVGTNGIGKSTALK+LAGKLKPNL                         +  +     + IKPQ+VD+    V+GN G++LE+ DER +
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL-------------------------VTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ
         EE+  D ELNQV++R    +SG ELQRFA   V ++
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQ

AT4G19210.1 RNAse l inhibitor protein 2

4.6e-33

62.32

Show/hide

Query:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM
        LPVPR  QVLGLVGTNGIGKSTALK+LAGKLKPNL                         TRIL     +IIKPQYVDH P AV+GN G+VL+QKDER+ 
Subjt:  LPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNL------------------------VTRILL-LCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNM

Query:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN
        K EL  D ELNQVIDR+V +LSG ELQRFA  VVAIQN
Subjt:  KEELYHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQN

AT5G23530.1 carboxyesterase 18

5.3e-05

41.18

Show/hide

Query:  SLPWKTRLFISISSVCGDLTTHPNNTVNGRLFRLFDFKSAPNRVKPIHAAS
        +LP KTR+ +++ S   D    P+ T+N R  RLFDF++ PN  KP++  S
Subjt:  SLPWKTRLFISISSVCGDLTTHPNNTVNGRLFRLFDFKSAPNRVKPIHAAS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAACCCTCCTCCCCAACCGCCGCCGTCGCCGCCCTCTGCCACCATCGCCCTCCGTCACCGCCTTTTTCTCCTTCTCTCCTTCTCCTTCTTCGAAACCGAACCCACCC
CACCAAGCAAGACCCTTTGCCTTCTCCGCCGCCGTTCACCGCCCTCAAATCCCCCTCTCTCCCTTGGAAAACCCGCCTCTTCATTTCCATCTCCTCCGTCTGCGGCGACC
TCACCACTCACCCCAACAACACTGTCAACGGCCGCCTCTTCCGCCTCTTCGATTTCAAATCCGCCCCGAATCGTGTCAAGCCCATCCACGCCGCCTCGCTCCCCATCATC
TACAATATTGCAGATGGTATGCGTCAAATGTTTGATCCATTTGAAAGGGTTGCCCGTGCTCATCATGTTTGCTCTTGTTGTGAGCGACCCTTTACAGCAGAAGAAGAAGA
TGAATTTGTTAAAAAGCAAAGAGTGAAGGCTGCAAGTTCTGCTGAGCATATGAAAGTGCCTGCAGTGGAGTCTTCAAGCTATCTTGACAAGGTCTTTATTGCTAATGAGA
TTATTGAAGACTGTAGGGCTAGCATGATGATAGAAATCTTTTTGGAAATTTATTTCAAGAAGGCTTATGATAATGTAGACCAAGAGTTTTTGGAAAACGTGTTATGGAAT
CAAGTTGAGATGGGGATTCGAGATTTGGGTTGGTTTGCATTCCTTGAACTTTTGCTTCCTGAGGTGTTAGGAAATCAAGATTCTATGGGTGTGTTGCCTGTTCCTCGGGT
CATGCAAGTTCTTGGTTTGGTTGGAACCAATGGTATTGGGAAGTCCACTGCTCTGAAAGTTTTGGCTGGAAAGCTGAAACCAAATCTTGTGACCCGTATTTTACTTTTAT
GTCATTCAATCATAAAGCCCCAATATGTTGACCACAATCCAATAGCAGTTCAAGGGAATGCTGGCCAGGTGCTAGAGCAAAAAGATGAGAGGAATATGAAGGAAGAACTC
TATCATGATCGTGAACTCAATCAGGTTATAGATCGCAATGTTGGTGATCTGTCTGGTTTAGAACTTCAAAGATTTGCATTTGTTGTTGTTGCCATACAGAACAATCATCG
GGGTTTTACAGCAGCTCTCGGAGTGGAAAAAAGGGAAGAATTTGTGGAAAAGGCACCATTG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKPSSPTAAVAALCHHRPPSPPFSPSLLLLLRNRTHPTKQDPLPSPPPFTALKSPSLPWKTRLFISISSVCGDLTTHPNNTVNGRLFRLFDFKSAPNRVKPIHAASLPII
YNIADGMRQMFDPFERVARAHHVCSCCERPFTAEEEDEFVKKQRVKAASSAEHMKVPAVESSSYLDKVFIANEIIEDCRASMMIEIFLEIYFKKAYDNVDQEFLENVLWN
QVEMGIRDLGWFAFLELLLPEVLGNQDSMGVLPVPRVMQVLGLVGTNGIGKSTALKVLAGKLKPNLVTRILLLCHSIIKPQYVDHNPIAVQGNAGQVLEQKDERNMKEEL
YHDRELNQVIDRNVGDLSGLELQRFAFVVVAIQNNHRGFTAALGVEKREEFVEKAPL

Spg000877 (gene) of Sponge gourd (cylindrica) v1 genome