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Spg000893 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000893
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold8:34524106..34529614
RNA-Seq ExpressionSpg000893
SyntenySpg000893
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-0442.25Show/hide
Query:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
        +  W+R K E+E S  K LY  LQ+IPG            +L D  M+  F+D+P  WKY  CM ILGR P
Subjt:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-0442.25Show/hide
Query:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
        +  W+R K E+E S  K LY +LQ+IPG            +L D  M+  F+D+P  WKY  CM ILGR P
Subjt:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein1.5e-0442.25Show/hide
Query:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
        +  W+R K E+E S  K LY  LQ+IPG            +L D  M+  F+D+P  WKY  CM ILGR P
Subjt:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
A0A5A7VG45 Retrotransposon protein8.6e-0542.25Show/hide
Query:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
        +  W+R K E+E S  K LY +LQ+IPG            +L D  M+  F+D+P  WKY  CM ILGR P
Subjt:  LGTWRR-KDEMERSHRKELYAKLQSIPG------------VLSDENMMTHFMDFPPGWKYDYCMEILGRAP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGTACGCCGACTTAATAAACCTACCATTTTGGGGACAAGACCGAGTGGGCCCTACCCTCTCACTGGCTCGAGAGGGGTTTCTGTTTGATGGTTG
GACCACAAATAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAAGTAGAGATCTCTCCCAAAAGACTCTCACAAGTCTCCTGCTTCAAGAAGTTTTCAAGATATACCA
GTGTAGCCGATTGGTGGTTTTCGCACAAGAGGGTTGCTGCGTTTTCGATCCTACTAGCGAGAAAAGGCGAATCGATCAAGGCTTTCTACAAAAATCTGAGTCGTTGTCGG
CGTATTCCCTTTCCTTGGCTTAGATCTGACGTCTTCTCATGCTACACCATCCGTCCACCATTCGACGAGGTCGGGCATGAGACTGGTTCGGGGAGGACGAGCTTGGTAGG
GAGGCCTAAACGTTTGCAAAAAACAGATGGCTGCATCGGCGCCAACTCCGAAGAAAGAGAAACATGTGTGGACCCCGGAGGAGGACACAGTCCTTGTGCAATGCCTAGTG
CACCTGGTGCATGTGGGAGGTGGCGTGGAGATAATGGGACGTTTCGCCCTAGGCAGGTGGTGCAGGACCTTCCCAGATACCACATAAGTGAAGATTGTCCATTGGGAACA
TGGCGGAGGAAGGATGAGATGGAGAGGAGTCATCGAAAGGAGTTGTATGCGAAGCTACAGTCCATACCTGGAGTACTTTCTGATGAGAACATGATGACTCACTTTATGGA
CTTCCCTCCAGGATGGAAGTACGACTACTGCATGGAAATCCTCGGCAGGGCACCGAGACAGCACCTGCAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGTACGCCGACTTAATAAACCTACCATTTTGGGGACAAGACCGAGTGGGCCCTACCCTCTCACTGGCTCGAGAGGGGTTTCTGTTTGATGGTTG
GACCACAAATAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGAAGTAGAGATCTCTCCCAAAAGACTCTCACAAGTCTCCTGCTTCAAGAAGTTTTCAAGATATACCA
GTGTAGCCGATTGGTGGTTTTCGCACAAGAGGGTTGCTGCGTTTTCGATCCTACTAGCGAGAAAAGGCGAATCGATCAAGGCTTTCTACAAAAATCTGAGTCGTTGTCGG
CGTATTCCCTTTCCTTGGCTTAGATCTGACGTCTTCTCATGCTACACCATCCGTCCACCATTCGACGAGGTCGGGCATGAGACTGGTTCGGGGAGGACGAGCTTGGTAGG
GAGGCCTAAACGTTTGCAAAAAACAGATGGCTGCATCGGCGCCAACTCCGAAGAAAGAGAAACATGTGTGGACCCCGGAGGAGGACACAGTCCTTGTGCAATGCCTAGTG
CACCTGGTGCATGTGGGAGGTGGCGTGGAGATAATGGGACGTTTCGCCCTAGGCAGGTGGTGCAGGACCTTCCCAGATACCACATAAGTGAAGATTGTCCATTGGGAACA
TGGCGGAGGAAGGATGAGATGGAGAGGAGTCATCGAAAGGAGTTGTATGCGAAGCTACAGTCCATACCTGGAGTACTTTCTGATGAGAACATGATGACTCACTTTATGGA
CTTCCCTCCAGGATGGAAGTACGACTACTGCATGGAAATCCTCGGCAGGGCACCGAGACAGCACCTGCAGCCATGA
Protein sequenceShow/hide protein sequence
MGESGQYADLINLPFWGQDRVGPTLSLAREGFLFDGWTTNRLFIRGALVLKEVEISPKRLSQVSCFKKFSRYTSVADWWFSHKRVAAFSILLARKGESIKAFYKNLSRCR
RIPFPWLRSDVFSCYTIRPPFDEVGHETGSGRTSLVGRPKRLQKTDGCIGANSEERETCVDPGGGHSPCAMPSAPGACGRWRGDNGTFRPRQVVQDLPRYHISEDCPLGT
WRRKDEMERSHRKELYAKLQSIPGVLSDENMMTHFMDFPPGWKYDYCMEILGRAPRQHLQP