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Spg000956 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg000956
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:43050320..43054502
RNA-Seq ExpressionSpg000956
SyntenySpg000956
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KQJ87215.1 hypothetical protein BRADI_4g09840v3 [Brachypodium distachyon]8.5e-0535.29Show/hide
Query:  VACWSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQV
        V  W  P     K+N + A D  +   G   +  +S+GDIVF ++ Y++   EAL  E HA  +GI  +  LG  ++I+E+DCQ+
Subjt:  VACWSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQV

XP_010665605.1 PREDICTED: uncharacterized protein LOC104882889 [Beta vulgaris subsp. vulgaris]6.5e-0532.43Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL
        WS P     K+N++A+ +      GI +I  NS+GD++F +S  I  +    +AE  AI   ++     G  ++I ESDCQV IN LS N     +++++
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL

Query:  VETIWGLSESF
        +  I   S  F
Subjt:  VETIWGLSESF

XP_010686484.1 PREDICTED: uncharacterized protein LOC104900691 [Beta vulgaris subsp. vulgaris]1.4e-0428.57Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL
        W+ P   +YK+N +A+        G+ ++  +SNGD+ F ++  +  +    LAE  AI  GI+     G  ++++ESDCQV I  L+ NV+    ++  
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL

Query:  VETIWGLSESFR
        +  I+     F+
Subjt:  VETIWGLSESFR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.4e-0437.93Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFL
        W  P     KVNS+AAC   S STG+ LI  +  G ++   S+++   L  L AE+  I + +K + +   T+L+VESDCQ AI  +
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFL

XP_024042921.1 uncharacterized protein LOC112099707 [Citrus clementina]1.3e-0531.86Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL
        W  P    YKVN +AA D      G+ ++  N NGDIV  +     F+ E   AE  AI  G++ + + G T +I ESDCQVA++  +        +  +
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL

Query:  VETIWGLSESFRE
        +  I    + F+E
Subjt:  VETIWGLSESFRE

TrEMBL top hitse value%identityAlignment
A0A0Q3EHL2 RNase H domain-containing protein4.1e-0535.29Show/hide
Query:  VACWSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQV
        V  W  P     K+N + A D  +   G   +  +S+GDIVF ++ Y++   EAL  E HA  +GI  +  LG  ++I+E+DCQ+
Subjt:  VACWSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQV

A0A1R3J1E8 Reverse transcriptase1.6e-0430.09Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL
        W  P     K+N + +        G+ ++  +++G IV  +S  + F    L AE+HA+  G + ++ LG  + IVESDC+VAI+ +      W     L
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL

Query:  VETIWGLSESFRE
        +  IW L+  F E
Subjt:  VETIWGLSESFRE

A0A6A3AVS7 Putative sugar phosphate/phosphate translocator2.0e-0432.94Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAIN
        W  P A   KVN N AC   S    + ++  +S G ++     Y+D   +++L E HA+C G++ ++ALG +K++V SD Q  ++
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAIN

A0A6J1BQ49 uncharacterized protein LOC1110047867.0e-0537.93Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFL
        W  P     KVNS+AAC   S STG+ LI  +  G ++   S+++   L  L AE+  I + +K + +   T+L+VESDCQ AI  +
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFL

B9RHJ1 RNase H domain-containing protein1.6e-0432.43Show/hide
Query:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL
        W  PLA  Y +N +A+      + G+  + SN  G+++F     I   LE  LAE  A+  G+  ++  G + +++ESDC   I  L+  V     ++ L
Subjt:  WSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEAL

Query:  VETIWGLSESF
        V+ I  LSESF
Subjt:  VETIWGLSESF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAATTACCGTTGCATGCTGGTCTTACCCGTTGGCGAGGACATATAAAGTTAATTCGAATGCAGCCTGCGATCCCTCTTCTCCATCGACAGGGATCAGATTGATATG
CAGTAACTCAAATGGAGACATTGTGTTTCCTTCTTCGGTTTACATCGATTTTCATCTGGAAGCCCTCTTAGCTGAGCTACATGCAATTTGCAAAGGGATTAAAGCGTCAA
TGGCTTTGGGATGCACAAAATTAATCGTGGAATCCGACTGTCAGGTGGCCATCAATTTTTTGTCAAAAAATGTAACCCCATGGAAGAATGTGGAAGCCCTGGTTGAAACT
ATTTGGGGATTGTCAGAATCATTCAGAGAGCAAGAGAGTAAGAGGAGAGAGTCGAGAGTTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGGTATAAATATCTGGCTAATGC
TCCTAGGGTTTTCAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGCCAGAGGCGGTAGGGATCAAACGGAGCCGGACGGGCTCGACCCGCGCGAGC
GAGCTGAGGGTCGGACCAAAAGCCCGACCCCTTCGGTCTTGGCCCGTCCCACTTGCCGGTTTCGCCTCTGGGATCCATCTCTTAGCCCTATTTTTACCCGGTTATCCTTA
TCAGCTCCTTGTACATCGGAGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAATTACCGTTGCATGCTGGTCTTACCCGTTGGCGAGGACATATAAAGTTAATTCGAATGCAGCCTGCGATCCCTCTTCTCCATCGACAGGGATCAGATTGATATG
CAGTAACTCAAATGGAGACATTGTGTTTCCTTCTTCGGTTTACATCGATTTTCATCTGGAAGCCCTCTTAGCTGAGCTACATGCAATTTGCAAAGGGATTAAAGCGTCAA
TGGCTTTGGGATGCACAAAATTAATCGTGGAATCCGACTGTCAGGTGGCCATCAATTTTTTGTCAAAAAATGTAACCCCATGGAAGAATGTGGAAGCCCTGGTTGAAACT
ATTTGGGGATTGTCAGAATCATTCAGAGAGCAAGAGAGTAAGAGGAGAGAGTCGAGAGTTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGGTATAAATATCTGGCTAATGC
TCCTAGGGTTTTCAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGGAACCGGGGCGGCCAGAGGCGGTAGGGATCAAACGGAGCCGGACGGGCTCGACCCGCGCGAGC
GAGCTGAGGGTCGGACCAAAAGCCCGACCCCTTCGGTCTTGGCCCGTCCCACTTGCCGGTTTCGCCTCTGGGATCCATCTCTTAGCCCTATTTTTACCCGGTTATCCTTA
TCAGCTCCTTGTACATCGGAGTGGTAA
Protein sequenceShow/hide protein sequence
MLITVACWSYPLARTYKVNSNAACDPSSPSTGIRLICSNSNGDIVFPSSVYIDFHLEALLAELHAICKGIKASMALGCTKLIVESDCQVAINFLSKNVTPWKNVEALVET
IWGLSESFREQESKRRESRVRVPFFSGEEGYKYLANAPRVFRNSEAFRDKPGGTGAARGGRDQTEPDGLDPRERAEGRTKSPTPSVLARPTCRFRLWDPSLSPIFTRLSL
SAPCTSEW