; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001008 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001008
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationscaffold8:40714533..40716753
RNA-Seq ExpressionSpg001008
SyntenySpg001008
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570903.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]9.2e-4383.48Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++ N+LM +ARRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

KAG7010748.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-4283.33Show/hide
Query:  MNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNV
        M++ N+LM +ARRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN 
Subjt:  MNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNV

Query:  EDAQCAKDAMDGKA
        +DAQ AKDAMDGKA
Subjt:  EDAQCAKDAMDGKA

XP_022944150.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]1.8e-4384.35Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.8e-4384.35Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]3.5e-4282.61Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++TN+LM + RRALTNIQ+P L FRCFCSQ   SSSSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQ---SSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

TrEMBL top hitse value%identityAlignment
A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial8.4e-4283.04Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED
        MM++TN+L+L+AR+ALTNIQ+P L FRCFCSQ S+SA SSSPS  +NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F N  D
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED

Query:  AQCAKDAMDGKA
        AQCAKDAMDGKA
Subjt:  AQCAKDAMDGKA

A0A5D3CH06 Glycine-rich RNA-binding protein 38.4e-4283.04Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED
        MM++TN+L+L+AR+ALTNIQ+P L FRCFCSQ S+SA SSSPS  +NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F N  D
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED

Query:  AQCAKDAMDGKA
        AQCAKDAMDGKA
Subjt:  AQCAKDAMDGKA

A0A6J1CG90 glycine-rich RNA-binding protein 4, mitochondrial-like2.2e-4285.71Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED
        MM++TN+ MLVARR LTNIQS TLR  CFCSQSS    SSSPS  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN +D
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVED

Query:  AQCAKDAMDGKA
        AQCAKDAMDGKA
Subjt:  AQCAKDAMDGKA

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like8.9e-4484.35Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like8.9e-4484.35Show/hide
Query:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MM++ N+LML+ARRALTNIQ+P L FRCFCSQSS   SSAPSSSPS  NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSS---SSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  VEDAQCAKDAMDGKA
         +DAQ AKDAMDGKA
Subjt:  VEDAQCAKDAMDGKA

SwissProt top hitse value%identityAlignment
P98179 RNA-binding protein 32.7e-1351.43Show/hide
Query:  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA
        S    KLFV GL+++ DE++L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A  A  AM+G++
Subjt:  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial4.2e-1446.91Show/hide
Query:  SQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        S SS S   +    +++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ E A  A  A+DG+
Subjt:  SQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial2.4e-1452.38Show/hide
Query:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK
Subjt:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial4.2e-1451.52Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

W8E7I1 RNA-binding protein 31.6e-1352.86Show/hide
Query:  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA
        S    KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN E A  A  AM+G++
Subjt:  SETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGKA

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-2369.88Show/hide
Query:  FCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        FC+ SSS++PSS       KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+F    DA  AKDAMDGK
Subjt:  FCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

AT3G23830.1 glycine-rich RNA-binding protein 41.7e-1552.38Show/hide
Query:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK
Subjt:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

AT3G23830.2 glycine-rich RNA-binding protein 41.7e-1552.38Show/hide
Query:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        SQSS+   +S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+  + A  A   MDGK
Subjt:  SQSSSSAPSS---SPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

AT4G13850.1 glycine-rich RNA-binding protein 23.0e-1551.52Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK

AT4G13850.2 glycine-rich RNA-binding protein 23.0e-1551.52Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGC
TCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTA
CTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGA
AAGGCAAGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCC
GAAGGTCTTGAAGCTCTTGGTAGACAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAACAGCACGAACTCCTTGATGCTGGTTGCCAGAAGAGCACTCACCAATATCCAGAGCCCAACTCTGAGATTTCGATGCTTCTGTTCTCAATCCTCCTCCTCAGC
TCCTTCGTCCTCTCCTTCTGAAACAAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCGATGGATGAGAGATCCTTGAAAGATGCGTTTTCTTCCTTTGGAGAGGTTA
CTGAAGTCAGGATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTCACAAACGTAGAAGATGCACAATGTGCAAAAGATGCAATGGATGGA
AAGGCAAGCGTTATTAGGGCGACCGTTGAGGATAAGTTTTGCCCTCGACAAGGTTCGCGGTGGACCTGTCGTCGTTCCTCGACTTTCAAACATCGACAACATTGTGGGCC
GAAGGTCTTGAAGCTCTTGGTAGACAAGTAG
Protein sequenceShow/hide protein sequence
MMNSTNSLMLVARRALTNIQSPTLRFRCFCSQSSSSAPSSSPSETNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNVEDAQCAKDAMDG
KASVIRATVEDKFCPRQGSRWTCRRSSTFKHRQHCGPKVLKLLVDK