; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg001026 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001026
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold8:37003122..37005276
RNA-Seq ExpressionSpg001026
SyntenySpg001026
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.3e-1737.79Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  +       P+ T++  G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.1e-1938.37Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK      + P     D ++++     +G R             R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  +       P+ T++  G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]1.1e-1943.35Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSR-GRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS
        +KYMSAEE    KK E E KR           K++R+ E    +P  S+  + D   G   Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSR-GRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
         P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+      D     P R++   D   P  EIR
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]2.3e-1737.79Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K  
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  +       P+ T++  G+ +  P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

XP_030936385.1 uncharacterized protein LOC115961562 [Quercus lobata]3.9e-1740.74Show/hide
Query:  KYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNP
        KYM+AE+ L +++ ER  KR      D+R+D+ ++  + G  R D  R RP  GR           F  +TP + P +Q+LM+I++   L  P KLK +P
Subjt:  KYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNP

Query:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETD---QRWPRPTRDDP
        + R K +YC FHRDHGH T NC  LK +IEALIR G L+ F ++  TD   ++ PR   D P
Subjt:  DNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETD---QRWPRPTRDDP

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128051.1e-1737.79Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YT T++P EQ+LMEI+N  LL  P ++ ++
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFH DHGH+T++C  LK+E+E LI  GYLKE+  +       P+ T++  G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DWY0 uncharacterized protein LOC1110252935.3e-2038.37Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK      + P     D ++++     +G R             R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K++
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDHGH+T++C  LK+E+E LIR GYLKE+  +       P+ T++  G+    P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DYL6 uncharacterized protein LOC1110257851.1e-1737.79Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN
        ++YMSA E   SK                R+   +RTD+      D  +G     R R  Q D  +KFE+YTPT++P EQ+LMEI++  LL  P ++K  
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSN

Query:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
           R K +YCLFHRDH H+T++   LK+E+E LIR GYL+E+  +       P+ T++  G+ +  P  EIR
Subjt:  PDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

A0A6J1DZ52 uncharacterized protein LOC1110256125.3e-2043.35Show/hide
Query:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSR-GRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS
        +KYMSAEE    KK E E KR           K++R+ E    +P  S+  + D   G   Q D  +KFE+YTPT++P EQ+LMEI++  LL  P  +K+
Subjt:  EKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRPDYSR-GRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR
         P+ R K +YCLFHRDHGH+T +C  LK+E+E LIR GYLKE+      D     P R++   D   P  EIR
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRPTRDDPGKDKGGPQLEIR

A0A7N2N013 Ribonuclease H2.5e-1742.38Show/hide
Query:  KYMSAEELLKSKKLEREYKRPSSSDR--DSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS
        KYM+AE+ L S++      RP   DR  DSR+D+ ++    G  R D  R +P  GR           F  +TP + P +Q+LM+I++   L  P KLKS
Subjt:  KYMSAEELLKSKKLEREYKRPSSSDR--DSRKDKKQRTDEGGRGRPDYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKS

Query:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQ
        +P  R + +YC FHRDHGH T +C  LK +IEALIR G L++F  K  TDQ
Subjt:  NPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCTAGCCGCCCCGGTTTCGCCTGTTGGCGCCGTCTGTGGGGAAGAAAGCTTGCCAAATCTGCATATCGGTCATTCCATGAGTAAGAGGATGGAGAAGAGAATTCA
AAACATAAACACAGAAAATTCGGATGGTGACCGCCACCAGCGGAGGTCACAAGAAGAAGGTCGAGATCGGCCTCAGACCGAATCTCCTCGTCCTCGATCTCCACTGCCCT
CATCCCGAGAGAAGCAAACTGATCTGAAATTTGCTGCTCTCGAGAACAAAGTAAGTGCGATGGATCATAATTTATCCAGGATACTTCGTATCTTGGATAAACCTGGTCCT
AGCACTAAAACCCCTGATGAGGGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAG
CATGACCAGCAAGGTCAGGGGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGGCATGACTACACAGTTTCTACCCCAAGCTATG
GTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCGAAAACTGCCGAGTCCGAGGCTAGAGCTGCCGAAGCTGAAGCTAGGGCTGCCGAGGCC
GAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAAAAGGGCAGCCTCCCTTGGAAGACTGAGCTTCTGAATGCACTGAAGAAGCTCGGAAATCC
TCAGGGAGACCTACCTAAGTTGAAAGGCTCAGGAACACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATGAGCGCAGAGGAGT
TGCTCAAATCAAAAAAGTTAGAACGTGAATACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCA
GACTATAGCCGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAGATTTT
GATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGCCTCTTTCATCGAGATCATGGACATT
CAACCAGAAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGACAGACCAGAGGTGGCCAAGGCCG
ACCAGAGATGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCTAGCCGCCCCGGTTTCGCCTGTTGGCGCCGTCTGTGGGGAAGAAAGCTTGCCAAATCTGCATATCGGTCATTCCATGAGTAAGAGGATGGAGAAGAGAATTCA
AAACATAAACACAGAAAATTCGGATGGTGACCGCCACCAGCGGAGGTCACAAGAAGAAGGTCGAGATCGGCCTCAGACCGAATCTCCTCGTCCTCGATCTCCACTGCCCT
CATCCCGAGAGAAGCAAACTGATCTGAAATTTGCTGCTCTCGAGAACAAAGTAAGTGCGATGGATCATAATTTATCCAGGATACTTCGTATCTTGGATAAACCTGGTCCT
AGCACTAAAACCCCTGATGAGGGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCAATCGAGTACACTGCAGAATCGGAGACGAGATCGAAGGGAAAGAAGACTAGCAG
CATGACCAGCAAGGTCAGGGGGCTCAAACCTACTGATCGTACGATTTTGAGGAGCCCAGAGTCAAGCACACTTAAGGGGCATGACTACACAGTTTCTACCCCAAGCTATG
GTCATACTAAGACAGACCTGAGGAATCTGATCGAGGAGAAGCGCAGAAGTGCGAAAACTGCCGAGTCCGAGGCTAGAGCTGCCGAAGCTGAAGCTAGGGCTGCCGAGGCC
GAGGCCAGAGCAGCCGAGGCCGAGGCTAGGTTGGCCGAGGCCGAGGCCAAAAAGGGCAGCCTCCCTTGGAAGACTGAGCTTCTGAATGCACTGAAGAAGCTCGGAAATCC
TCAGGGAGACCTACCTAAGTTGAAAGGCTCAGGAACACAAGACTTGGAAGAATTGATCGACCAAGTTGACCCGCCCTTCACAGAAGAAAAATACATGAGCGCAGAGGAGT
TGCTCAAATCAAAAAAGTTAGAACGTGAATACAAGAGGCCTTCTTCATCTGACCGCGACAGTAGGAAGGACAAGAAGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCA
GACTATAGCCGAGGCCGACCAGATCATGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAGAGGTACACCCCTACTTCAATCCCACAGGAGCAGATTTT
GATGGAGATAAGGAATACAAACCTGCTCAACGCGCCCAGGAAGCTGAAGTCCAATCCTGACAACAGAGACAAGAGCCAGTATTGCCTCTTTCATCGAGATCATGGACATT
CAACCAGAAACTGCATTCAGCTAAAGGACGAGATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACTAAGGCCGAGACAGACCAGAGGTGGCCAAGGCCG
ACCAGAGATGACCCAGGCAAAGACAAGGGTGGACCTCAACTGGAAATTCGTTGA
Protein sequenceShow/hide protein sequence
MSLAAPVSPVGAVCGEESLPNLHIGHSMSKRMEKRIQNINTENSDGDRHQRRSQEEGRDRPQTESPRPRSPLPSSREKQTDLKFAALENKVSAMDHNLSRILRILDKPGP
STKTPDEGLVRDPRKGKEPIEYTAESETRSKGKKTSSMTSKVRGLKPTDRTILRSPESSTLKGHDYTVSTPSYGHTKTDLRNLIEEKRRSAKTAESEARAAEAEARAAEA
EARAAEAEARLAEAEAKKGSLPWKTELLNALKKLGNPQGDLPKLKGSGTQDLEELIDQVDPPFTEEKYMSAEELLKSKKLEREYKRPSSSDRDSRKDKKQRTDEGGRGRP
DYSRGRPDHGRGRPDQGDYLKKFERYTPTSIPQEQILMEIRNTNLLNAPRKLKSNPDNRDKSQYCLFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAETDQRWPRP
TRDDPGKDKGGPQLEIR