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Spg001043 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg001043
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold8:40890526..40891272
RNA-Seq ExpressionSpg001043
SyntenySpg001043
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]1.1e-0627.37Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSY-LKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY
        +W+IW+ RN + +  ++  A  + +   E  ++WE    +KT+         S+++W+ P    WK N+D  W + +   G+GW++RD  G++I+
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSY-LKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY

CAB4313148.1 unnamed protein product [Prunus armeniaca]2.8e-0733.33Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQ-SPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA
        +W+IW+ARN V     + +     H + +   ++  +    Q  P++P S      W KPPP   K+N DA W  +   GG+GW++RDS G L+ A
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQ-SPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA

XP_013705205.1 uncharacterized protein LOC106409061 [Brassica napus]1.1e-0629.69Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWE-----SSYLKTQSPIRPGSCVSQAQWQKPPPNCW-KLNSDAVWFEKEGSGGMGWLVRDSEGSLIY
        +W++W+ RN++  + ++ EA  I     E   +WE     +  ++    +      SQA+  KPPP  W K NSD  W +   + G+GWL RD EG L+ 
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWE-----SSYLKTQSPIRPGSCVSQAQWQKPPPNCW-KLNSDAVWFEKEGSGGMGWLVRDSEGSLIY

Query:  A-LEVVRALNGEVEDLSDLKSFTEEIRA
        A   VV  L   +   ++   + +E  A
Subjt:  A-LEVVRALNGEVEDLSDLKSFTEEIRA

XP_018435800.1 PREDICTED: uncharacterized protein LOC108808101 [Raphanus sativus]2.5e-0831.9Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA----
        +W++W+ RN      +  +AD     + E  ++W +   +K +    P + VS  +W  PPP   K N+D  W ++  SGG+GW++RD + +L++A    
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA----

Query:  LEVVR-ALNGEVEDLS
        L VVR A+  E E +S
Subjt:  LEVVR-ALNGEVEDLS

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.4e-0831.03Show/hide
Query:  WKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSG
        W+IWE+RNR     + ++   +  SI           L   S I  G+C+SQ                       +W  PP NCWKLN+DA W E+   G
Subjt:  WKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSG

Query:  GMGWLVRDSEGSLIYA
        G+GW++ D  G ++ A
Subjt:  GMGWLVRDSEGSLIYA

TrEMBL top hitse value%identityAlignment
A0A6D2KM87 RNase H domain-containing protein5.2e-0727.37Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSY-LKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY
        +W+IW+ RN + +  ++  A  + +   E  ++WE    +KT+         S+++W+ P    WK N+D  W + +   G+GW++RD  G++I+
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSY-LKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY

A0A6J0JJI5 uncharacterized protein LOC1088081011.2e-0831.9Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA----
        +W++W+ RN      +  +AD     + E  ++W +   +K +    P + VS  +W  PPP   K N+D  W ++  SGG+GW++RD + +L++A    
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA----

Query:  LEVVR-ALNGEVEDLS
        L VVR A+  E E +S
Subjt:  LEVVR-ALNGEVEDLS

A0A6J1CQG0 uncharacterized protein LOC1110132163.6e-0831.03Show/hide
Query:  WKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSG
        W+IWE+RNR     + ++   +  SI           L   S I  G+C+SQ                       +W  PP NCWKLN+DA W E+   G
Subjt:  WKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQ----------------------AQWQKPPPNCWKLNSDAVWFEKEGSG

Query:  GMGWLVRDSEGSLIYA
        G+GW++ D  G ++ A
Subjt:  GMGWLVRDSEGSLIYA

A0A6J1D4B6 uncharacterized protein LOC1110171816.7e-0727.17Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA-----
        +W IW  RN++ +S  +        +  ES     ++ L     +   +      W  P  + WKLN DA W +   +GG+GW+VRDSEG  I A     
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA-----

Query:  -------------------LEVVRALNGEVEDLSDLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRA
                           LEVV  +N     L+++    E+I    +      F H     N  AH +ARRA
Subjt:  -------------------LEVVRALNGEVEDLSDLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRA

A0A6J5XPQ2 RNase H domain-containing protein1.4e-0733.33Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQ-SPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA
        +W+IW+ARN V     + +     H + +   ++  +    Q  P++P S      W KPPP   K+N DA W  +   GG+GW++RDS G L+ A
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQ-SPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.7e-0724.21Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY
        +W++W++RN +    ++ +A  +     E F++W +   L+ ++           QW+ PP    K N+DA W  +    G+GW++R+  G +++
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWES-SYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIY

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0424.21Show/hide
Query:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYL--KTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLI
        MW+IW++ N +  +  + +            K+W  + +  + Q+  R        +W  P  +  K N DA   E+    G+GW++R+S+G++I
Subjt:  MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYL--KTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAAATCTGGGAAGCCAGAAACAGAGTTTGTAATTCAGCCCAGAAAGTAGAAGCAGATTGGATCAAGCACTCCATAGAAGAAAGCTTTAAAGATTGGGAGTCTTC
TTACCTCAAGACCCAATCTCCGATTAGGCCAGGGAGCTGTGTGAGTCAAGCACAATGGCAAAAGCCTCCTCCCAATTGCTGGAAATTGAACTCCGACGCCGTCTGGTTCG
AGAAAGAAGGCAGTGGCGGGATGGGTTGGTTGGTGCGTGACTCAGAGGGCTCCTTGATCTATGCACTTGAAGTGGTCAGAGCTCTGAACGGCGAAGTTGAGGACCTTTCG
GACTTGAAGTCTTTCACGGAAGAGATTCGCGCCATAGCTGATCGTTCTTTCTCCGCGAAATTTGTCCATTGTAGCCAATTTTTGAACACAGAGGCACATTGTGTTGCGAG
GAGAGCTGCTTCTCTCCTCCGTTCCCCTCTCTCCTCTTCTCTGTCTCCTTCATCATCTTCTTCTATCTCTGGTGTTTTGTTTTCGCGGGAAAGGGAACACATCTTTTGGG
CCCCTAATATCCCTAATTTCATTTACCCTCTCATTAATGAGGGAAGGTGTAATGGTTGTTTGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAAATCTGGGAAGCCAGAAACAGAGTTTGTAATTCAGCCCAGAAAGTAGAAGCAGATTGGATCAAGCACTCCATAGAAGAAAGCTTTAAAGATTGGGAGTCTTC
TTACCTCAAGACCCAATCTCCGATTAGGCCAGGGAGCTGTGTGAGTCAAGCACAATGGCAAAAGCCTCCTCCCAATTGCTGGAAATTGAACTCCGACGCCGTCTGGTTCG
AGAAAGAAGGCAGTGGCGGGATGGGTTGGTTGGTGCGTGACTCAGAGGGCTCCTTGATCTATGCACTTGAAGTGGTCAGAGCTCTGAACGGCGAAGTTGAGGACCTTTCG
GACTTGAAGTCTTTCACGGAAGAGATTCGCGCCATAGCTGATCGTTCTTTCTCCGCGAAATTTGTCCATTGTAGCCAATTTTTGAACACAGAGGCACATTGTGTTGCGAG
GAGAGCTGCTTCTCTCCTCCGTTCCCCTCTCTCCTCTTCTCTGTCTCCTTCATCATCTTCTTCTATCTCTGGTGTTTTGTTTTCGCGGGAAAGGGAACACATCTTTTGGG
CCCCTAATATCCCTAATTTCATTTACCCTCTCATTAATGAGGGAAGGTGTAATGGTTGTTTGGTTTAG
Protein sequenceShow/hide protein sequence
MWKIWEARNRVCNSAQKVEADWIKHSIEESFKDWESSYLKTQSPIRPGSCVSQAQWQKPPPNCWKLNSDAVWFEKEGSGGMGWLVRDSEGSLIYALEVVRALNGEVEDLS
DLKSFTEEIRAIADRSFSAKFVHCSQFLNTEAHCVARRAASLLRSPLSSSLSPSSSSSISGVLFSREREHIFWAPNIPNFIYPLINEGRCNGCLV